CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.8523.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.8523.1.S1_at CV239620 hypothetical protein - 9e-106 At1g55360 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.210287.1.S1_s_at pmrna20235 hypothetical protein - 1e-51 At5g24310 ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) S.X. H.G.
0.18 30.8 PtpAffx.65875.1.A1_at CV257907 hypothetical protein - 7e-3 At3g16060 kinesin motor family protein S.X. H.G.
0.14 23.5 PtpAffx.96776.2.S1_at CK087371 hypothetical protein - 8e-53 At5g05080 UBC22 (ubiquitin-conjugating enzyme 22) S.X. H.G.
0.07 11.6 PtpAffx.207524.1.S1_s_at pmrna14936 aminophospholipid ATPase - 8e-49 At5g04930 ALA1 (aminophospholipid ATPase1) S.X. H.G.
0.07 11.6 PtpAffx.143388.1.S1_at CF230264 hypothetical protein - 4e-3 At1g29370 kinase-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.3 98.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 0 662 PtpAffx.8523.4.A1_at CV245413 - - 9e-24 At1g55360 unknown protein C.G. S.X.
0.25 0 662 PtpAffx.8523.4.A1_a_at CV245413 - - 9e-24 At1g55360 unknown protein C.G. S.X.
0.35 4e-118 426 PtpAffx.8523.2.S1_at BI069505 hypothetical protein - 4e-32 At5g56530 unknown protein C.G. S.X.
0.35 4e-118 426 PtpAffx.8523.2.S1_a_at BI069505 hypothetical protein - 4e-32 At5g56530 unknown protein C.G. S.X.
0.24 2e-85 317 Ptp.6391.1.S1_s_at CA934886 hypothetical protein - 3e-65 At1g55360 unknown protein C.G. S.X.
0.29 1e-71 272 PtpAffx.8523.8.S1_at CV225763 hypothetical protein - 1e-3 At1g55360 unknown protein C.G. S.X.
0.11 5e-31 137 PtpAffx.114168.1.A1_at CV259342 - - 2e-28 At1g55360 unknown protein C.G. S.X.
0.19 1e-22 109 PtpAffx.8523.6.S1_at CK089344 hypothetical protein - 2e-1 At2g29340 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.11 4e-22 107 PtpAffx.11682.1.A1_s_at CN523252 hypothetical protein - 6e-19 At1g55360 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 9e-106 385 Arabidopsis thaliana At1g55360 841982 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB - - - C.G. S.X.
0.47 7e-172 605 Glycine max Gma.2172.2.S1_a_at BI426425 - - 1e-145 At1g55360 unknown protein C.G. S.X.
0.20 1e-20 101 Hordeum vulgare Contig5275_at Contig5275 - - 3e-22 At3g13510 unknown protein C.G. S.X.
0.28 2e-40 169 Oryza sativa Os07g0573400 AK121705.1 - Protein of unknown function DUF239 domaincontaining protein 8e-42 At3g13510 unknown protein C.G. S.X.
0.20 3e-10 67 Triticum aestivum Ta.7595.1.A1_at BJ261301 - - 5e-4 At3g13510 unknown protein C.G. S.X.
0.47 0 795 Vitis vinifera 1620804_at CD797824 hypothetical protein LOC100267227 - 3e-114 At1g55360 unknown protein C.G. S.X.
0.18 6e-28 125 Zea mays Zm.18312.1.S1_at CK827776 hypothetical protein LOC100279515 - 7e-17 At3g13510 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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