Gene omics information

Query gene ID PtpAffx.85113.1.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7393.6PtpAffx.85113.1.A1_atCX182523--2e-9At3g50770calmodulin-related protein, putativeS.X.H.G.
0.6791.1Ptp.5212.1.A1_atCV259751hypothetical protein-2e+0At1g35430unknown proteinS.X.H.G.
0.4067.0PtpAffx.221977.1.S1_s_atpmrna39130hypothetical protein-1e-1At2g4571040S ribosomal protein S27 (RPS27A)S.X.H.G.
0.2747.1PtpAffx.46298.1.S1_atCV268419outward rectifying potassium channel-2e+0At4g01840KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5)S.X.H.G.
0.2340.5PtpAffx.73917.1.S1_atDN501347--6e+0At4g22160unknown proteinS.X.H.G.
0.1830.8PtpAffx.204567.1.S1_atpmrna8963SAUR family protein-2e-12At2g21200auxin-responsive protein, putativeS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
20.199.7GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
17.199.6GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
11.799.2GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
10.699.0GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
5.196.8GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
4.696.2GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
2.992.5GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
2.590.9GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.693e-172605Ptp.1308.1.S1_atCV242966hypothetical protein-2e-6At3g50770calmodulin-related protein, putativeC.G.S.X.
0.025e-136PtpAffx.17914.2.A1_a_atCV257560hypothetical protein-3e-51At2g28950ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)C.G.S.X.
0.022e+034PtpAffx.823.1.S1_atCV270923--2e+0At3g28680prolylcarboxypeptidase-relatedC.G.S.X.
0.022e+034PtpAffx.82593.1.A1_atCV240978hypothetical protein-3e-11At5g52830WRKY27C.G.S.X.
0.022e+034PtpAffx.5191.1.A1_atCV258019hypothetical protein-2e+0At4g17420-C.G.S.X.
0.042e+034PtpAffx.212808.1.S1_atpmrna25066hypothetical protein-6e-1At2g04690cellular repressor of E1A-stimulated genes (CREG) familyC.G.S.X.
0.022e+034PtpAffx.211874.1.S1_atpmrna23314hypothetical protein-9e-2At3g20800rcd1-like cell differentiation protein, putativeC.G.S.X.
0.032e+034PtpAffx.204979.1.S1_atpmrna9852hypothetical protein-1e+0At4g26280sulfotransferase family proteinC.G.S.X.
0.012e+034PtpAffx.198.1.S1_atCV242920hypothetical protein-3e-115Atcg00750-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.152e-963Arabidopsis thalianaAt3g50770824241calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOB---C.G.S.X.
0.199e-652Glycine maxGma.724.1.S1_a_atBE658675--2e-1At1g31460unknown proteinC.G.S.X.
0.037e-134Hordeum vulgareHV_CEb0012K14r2_x_atHV_CEb0012K14r2--2e+0At5g19030RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.023e+034Oryza sativaOs05g0401300CB679743-Twin-arginine translocation pathway signal domaincontaining protein2e+0At1g04820TUA4C.G.S.X.
0.032e+034Triticum aestivumTaAffx.113839.1.S1_atCA603900--9e+0At4g02080ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)C.G.S.X.
0.037e-340Vitis vinifera1616783_atCF405837hypothetical protein LOC100267386-9e-11At1g23800ALDH2B7C.G.S.X.
0.023e+032Zea maysZm.9061.1.A1_atBM341558--5e+0At1g50560CYP705A25C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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