Gene omics information

Query gene ID	PtpAffx.84979.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.84979.1.S1_at	CV254755	hypothetical protein	-	2e-4	At5g06720	peroxidase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.139.1.S1_at	CV267827	aquaporin, MIP family, PIP subfamily	-	3e-37	At5g60660	PIP2	S.X.	H.G.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.220048.1.S1_at	pmrna36320	hypothetical protein	-	7e-7	At2g35270	DNA-binding protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.205813.1.S1_at	pmrna11499	hypothetical protein	-	7e+0	At3g18160	peroxin-3 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.206282.1.S1_at	pmrna12451	hypothetical protein	-	7e-11	At2g37900	proton-dependent oligopeptide transport (POT) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.204601.1.S1_at	pmrna9035	hypothetical protein	-	2e+0	At5g52750	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.54	80.8	PtpAffx.211928.1.S1_at	pmrna23424	hypothetical protein	-	2e+0	At2g33793	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.221199.1.S1_at	pmrna37897	hypothetical protein	-	8e+0	At4g31460	ribosomal protein L28 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.45	72.3	PtpAffx.120558.1.A1_at	CV274491	-	-	1e+0	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.208398.1.S1_s_at	pmrna16696	hypothetical protein	-	3e-3	At1g10480	ZFP5 (ZINC FINGER PROTEIN 5)	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.3	99.9	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
19.9	99.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
14.6	99.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
14.4	99.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.1	78.0	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
0.8	72.0	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
0.8	72.0	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	1e-79	297	PtpAffx.5.2.S1_a_at	CV249715	hypothetical protein	-	1e-3	At2g38380	peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase E	C.G.	S.X.	Please selecteFP Browser (expression)
0.44	6e-54	212	PtpAffx.224340.1.S1_at	pmrna42800	hypothetical protein	-	1e-14	At4g08780	peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	1e-15	85	PtpAffx.25548.1.S1_a_at	X97351.1	hypothetical protein	-	7e-7	At5g06720	peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	1e-15	85	PtpAffx.25548.1.S1_at	X97351.1	-	-	7e-7	At5g06720	peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.31	2e-13	77	PtpAffx.25548.2.S1_at	D30653.1	hypothetical protein	-	2e-4	At4g08780	peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	2e-13	77	PtpAffx.25548.2.S1_x_at	D30653.1	hypothetical protein	-	2e-4	At4g08780	peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	9e-4	46	PtpAffx.34213.1.S1_at	CV269008	-	-	4e-2	At5g19890	peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-3	44	PtpAffx.200614.1.S1_at	pmrna1203	hypothetical protein	-	5e-1	At5g22410	peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-2	42	PtpAffx.200699.1.S1_s_at	pmrna1349	hypothetical protein	-	2e-6	At2g22420	peroxidase 17 (PER17) (P17)	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e-4	48	Arabidopsis thaliana	At5g06720	830561	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	6e-8	59	Glycine max	Gma.876.1.S1_at	L78163.1	peroxidase	-	4e-5	At2g38390	peroxidase, putative	C.G.	S.X.	Please select
0.03	7e-2	38	Hordeum vulgare	Contig2112_at	Contig2112	-	-	1e-8	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.03	5e-3	44	Oryza sativa	Os01g0172600	AK058554.1	-	Peroxidase 25 precursor (EC 1.11.1.7) (AtperoxP25)	2e-10	At2g41480	electron carrier/ heme binding / peroxidase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e-1	36	Triticum aestivum	TaAffx.131397.2.S1_at	CA630572	-	-	3e-1	At2g41480	electron carrier/ heme binding / peroxidase	C.G.	S.X.	Please select
0.10	2e-22	105	Vitis vinifera	1610538_at	BQ796215	hypothetical protein LOC100260291	-	3e-1	At1g60740	peroxiredoxin type 2, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Zea mays	Zm.2707.1.S1_at	BG842199	-	-	2e-1	At5g05340	peroxidase, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage