Gene omics information

Query gene ID	PtpAffx.84497.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	PtpAffx.84497.1.S1_s_at	CF231611	hypothetical protein	-	9e-17	At3g18140	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.149909.1.S1_s_at	AJ773011	hypothetical protein	-	3e-141	At2g13560	malate oxidoreductase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.150645.1.S1_at	AJ778728	hypothetical protein	-	2e-15	At1g75420	glycosyl transferase family 1 protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.3086.1.S1_s_at	BU832807	hypothetical protein	-	4e-47	At2g13560	malate oxidoreductase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.201217.1.S1_at	pmrna2417	hypothetical protein	-	2e-2	At2g14255	zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.5420.1.S1_s_at	CK099218	hypothetical protein	-	2e-30	At1g63770	peptidase M1 family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	93.5	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	0	969	Ptp.2557.1.S1_at	CV229628	hypothetical protein	-	3e-68	At3g18140	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.213402.1.S1_at	pmrna26218	hypothetical protein	-	2e-1	At3g11680	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.203266.1.S1_at	pmrna6473	hypothetical protein	-	1e-2	At3g10140	RECA3 (recA homolog 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.58681.1.A1_at	BI126480	hypothetical protein	-	4e-4	At4g28260	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.39448.1.A1_at	CK090667	iaa-amino acid hydrolase 11	-	4e-38	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e+0	32	PtpAffx.224937.1.S1_at	pmrna43872	hypothetical protein	-	9e-1	At1g63230	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e+0	32	PtpAffx.215255.1.S1_at	pmrna29341	hypothetical protein	-	3e-1	At1g01820	PEX11C (PEROXIN 11C)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.202037.1.S1_at	pmrna4061	hypothetical protein	-	2e-9	At2g21470	SAE2 (SUMO-ACTIVATING ENZYME 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.200569.1.S1_at	pmrna1123	hypothetical protein	-	1e-12	At1g10910	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	9e-17	87	Arabidopsis thaliana	At3g18140	821339	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.35	8e-55	214	Glycine max	Gma.4861.1.S1_at	CD394162	-	-	5e-91	At3g18140	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HW01E12u_x_at	HW01E12u	-	-	1e+0	At3g49820	unknown protein	C.G.	S.X.	Please select
0.20	8e-19	95	Oryza sativa	Os03g0681700	AK111767.1	-	-	1e-11	At3g18140	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	7e-24	111	Triticum aestivum	TaAffx.88833.1.S1_at	CA485911	-	-	5e-16	At3g18140	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1616611_at	CF404283	-	-	2e-1	At2g33220	-	C.G.	S.X.	Please select
0.21	2e-37	155	Zea mays	Zm.3879.1.A1_at	CK347777	hypothetical protein LOC100191700	-	7e-23	At3g18140	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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