CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.84233.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.70 91.7 PtpAffx.84233.1.A1_at CK094686 - - 6e-1 At1g30060 COP1-interacting protein-related S.X. H.G.
0.21 36.5 PtpAffx.200572.1.S1_at pmrna1138 hypothetical protein - 2e-1 At5g07310 AP2 domain-containing transcription factor, putative S.X. H.G.
0.20 34.6 PtpAffx.47971.1.S1_at DN492834 - - 2e+0 At4g32915 - S.X. H.G.
0.19 32.7 PtpAffx.214124.1.S1_at pmrna27493 hypothetical protein - 5e-43 Atcg00350 - S.X. H.G.
0.15 25.3 PtpAffx.220741.1.S1_x_at pmrna37160 hypothetical protein - 1e+0 At1g45145 ATTRX5 S.X. H.G.
0.12 19.6 PtpAffx.217366.1.S1_at pmrna32591 - - 5e-1 At1g25330 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.08 12.9 PtpAffx.225276.1.S1_at pmrna44505 cc-nbs-lrr resistance protein - 2e+0 At5g42790 PAF1 S.X. H.G.
0.08 12.9 PtpAffx.56205.1.A1_at CV273765 hypothetical protein - 8e-1 At4g02850 phenazine biosynthesis PhzC/PhzF family protein S.X. H.G.
0.07 11.6 PtpAffx.210708.1.S1_at pmrna21002 hypothetical protein - 1e-1 At2g04570 GDSL-motif lipase/hydrolase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.4 99.7 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
17.3 99.6 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
8.4 98.6 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
7.1 98.1 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.0 98.0 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6 96.2 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2 93.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 36 PtpAffx.201620.1.S1_at pmrna3209 hypothetical protein - 1e-22 At3g51150 kinesin motor family protein C.G. S.X.
0.02 8e-1 34 PtpAffx.21534.2.S1_at CV232397 hypothetical protein - 4e-30 At3g56190 ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) C.G. S.X.
0.02 8e-1 34 PtpAffx.212929.1.S1_at pmrna25294 hypothetical protein - 6e-20 At5g50970 WD-40 repeat family protein C.G. S.X.
0.03 3e+0 32 PtpAffx.53113.1.S1_at BU791131 hypothetical protein - 3e-36 At4g34530 CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1) C.G. S.X.
0.05 3e+0 32 PtpAffx.47292.1.S1_at BU823210 - - 7e-1 At3g21920 pollen coat receptor kinase, putative C.G. S.X.
0.04 3e+0 32 PtpAffx.223255.1.S1_at pmrna41158 hypothetical protein - 4e+0 At5g62165 AGL42 (AGAMOUS LIKE 42) C.G. S.X.
0.03 3e+0 32 PtpAffx.213715.1.S1_at pmrna26764 hypothetical protein - 9e-1 At4g29400 unknown protein C.G. S.X.
0.03 3e+0 32 PtpAffx.213686.1.S1_at pmrna26720 hypothetical protein - 8e-6 At5g01700 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.02 3e+0 32 PtpAffx.211653.1.S1_at pmrna22835 catechol o-methyltransferase - 9e-3 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-1 34 Arabidopsis thaliana At1g30060 839885 COP1-interacting protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM - - - C.G. S.X.
0.05 3e+0 32 Glycine max GmaAffx.26744.1.S1_at BF008922 - - 8e-1 At3g15352 ATCOX17 C.G. S.X.
0.04 4e+0 30 Hordeum vulgare HU10L19u_at HU10L19u - - 4e+0 At5g60400 unknown protein C.G. S.X.
0.04 1e+0 34 Oryza sativa Os07g0526400 BI806666 - Chalcone synthase (EC 2.3.1.74)(Naringenin-chalcone synthase) 4e+0 At3g21920 pollen coat receptor kinase, putative C.G. S.X.
0.06 2e-1 36 Triticum aestivum TaAffx.56387.1.S1_at CA652683 - - 1e+1 At5g44850 - C.G. S.X.
0.05 7e-1 32 Vitis vinifera 1606837_at CF074716 - - 2e+0 At2g43660 glycosyl hydrolase family protein 17 C.G. S.X.
0.04 2e+1 28 Zea mays ZmAffx.1387.1.S1_at 40794996-62 - - 1e+1 At5g04030 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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