CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.84152.1.A1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.84152.1.A1_s_at CK097049 hypothetical protein - 1e-22 At1g71350 eukaryotic translation initiation factor SUI1 family protein S.X. H.G.
0.60 86.0 PtpAffx.37317.1.A1_a_at CV246331 hypothetical protein - 2e-30 At5g07120 SNX2b (SORTING NEXIN 2b) S.X. H.G.
0.60 86.0 PtpAffx.1466.1.S1_at AJ770504 hypothetical protein - 8e-6 At5g25060 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.57 84.2 PtpAffx.35315.1.S1_at CF229140 hypothetical protein - 1e+0 At5g54850 unknown protein S.X. H.G.
0.44 71.9 Ptp.7904.1.S1_at BU809020 hypothetical protein - 8e-1 At2g27250 CLV3 (CLAVATA3) S.X. H.G.
0.44 71.9 Ptp.3766.1.S1_at CV249196 hypothetical protein - 2e-59 At3g42830 ring-box protein Roc1/Rbx1/Hrt1, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.6 98.3 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.3 97.7 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.2 96.8 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 4e-54 212 PtpAffx.211239.1.S1_at pmrna22067 hypothetical protein - 2e+0 At5g15000 - C.G. S.X.
0.24 3e-48 192 PtpAffx.215564.1.S1_at pmrna29832 hypothetical protein - 8e-1 At4g04810 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein C.G. S.X.
0.04 2e-3 44 PtpAffx.205265.1.S1_at pmrna10442 hypothetical protein - 2e-1 At1g16270 protein kinase family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.80955.1.S1_at DN491150 hypothetical protein - 2e+0 At5g19070 - C.G. S.X.
0.01 2e+0 34 PtpAffx.4509.1.S1_at CX171993 hypothetical protein - 5e-2 At5g04220 SYTC C.G. S.X.
0.02 2e+0 34 PtpAffx.214994.1.S1_at pmrna28932 hypothetical protein - 7e+0 At4g11020 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.211078.1.S1_at pmrna21761 hypothetical protein - 5e-8 At5g56360 calmodulin-binding protein C.G. S.X.
0.02 2e+0 34 PtpAffx.206601.1.S1_at pmrna13097 hypothetical protein - 9e-3 At5g42450 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.03 8e+0 32 PtpAffx.7247.1.A1_at CK094801 hypothetical protein - 5e-3 At2g04039 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-22 107 Arabidopsis thaliana At1g71350 843476 eukaryotic translation initiation factor SUI1 family protein F:RNA binding, translation initiation factor activity;P:translational initiation;C:unknown;MFOPA - - - C.G. S.X.
0.43 1e-35 151 Glycine max Gma.10528.1.S1_at BM270365 - - 6e-25 At1g71350 eukaryotic translation initiation factor SUI1 family protein C.G. S.X.
0.10 7e-7 54 Hordeum vulgare Contig18044_at Contig18044 - - 1e+0 At3g47070 unknown protein C.G. S.X.
0.02 3e+0 34 Oryza sativa Os08g0135500 AK109912.1 - - 3e-2 At4g16165 Expressed protein C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.87235.1.S1_at CA593510 - - 9e-1 At1g02780 emb2386 (embryo defective 2386) C.G. S.X.
0.33 4e-35 147 Vitis vinifera 1618321_at CB982883 hypothetical protein LOC100260152 - 1e-18 At1g71350 eukaryotic translation initiation factor SUI1 family protein C.G. S.X.
0.03 6e-1 34 Zea mays ZmAffx.453.1.S1_at AI677167 - - 1e-2 At1g71350 eukaryotic translation initiation factor SUI1 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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