Gene omics information

Query gene ID	PtpAffx.83555.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	67.0	PtpAffx.83555.1.S1_s_at	BI068935	hypothetical protein	-	3e-4	At1g14850	NUP155	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.3064.2.S1_at	CX185938	hypothetical protein	-	2e-9	At5g66680	DGL1	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.100628.1.S1_s_at	CF232037	hypothetical protein	-	2e+0	At2g38350	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.10658.1.S1_at	DN500790	-	-	6e-4	At1g07705	transcription regulator	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.94386.1.S1_at	CN523156	hypothetical protein	-	9e-46	At1g73720	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.26440.3.S1_a_at	CV237961	hypothetical protein	-	1e-24	At3g53500	zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.225000.1.S1_at	pmrna43976	hypothetical protein	-	1e-86	At5g45160	root hair defective 3 GTP-binding (RHD3) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.150427.1.S1_at	BU832236	hypothetical protein	-	4e-37	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	Ptp.5539.3.S1_a_at	CV273441	hypothetical protein	-	9e-17	At4g26430	CSN6B	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	93.5	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1176	PtpAffx.83555.1.S1_at	BI068935	hypothetical protein	-	3e-4	At1g14850	NUP155	C.G.	S.X.	Please selecteFP Browser (expression)
0.66	0	1025	PtpAffx.208077.1.S1_at	pmrna16044	hypothetical protein	-	3e-18	At1g14850	NUP155	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	3e-20	99	PtpAffx.208867.1.S1_at	pmrna17573	hypothetical protein	-	2e-5	At1g14850	NUP155	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.207669.1.S1_at	pmrna15226	hypothetical protein	-	3e-57	At2g39340	SAC3/GANP family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.203606.1.S1_at	pmrna7150	hypothetical protein	-	6e-15	At1g55550	ATP binding / microtubule motor	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.225304.1.S1_at	pmrna44558	hypothetical protein	-	2e-49	At1g72440	EDA25 (embryo sac development arrest 25)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.115467.1.S1_at	AJ777473	hypothetical protein	-	8e-24	At4g36400	FAD linked oxidase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.95803.1.S1_at	CV232122	hypothetical protein	-	1e-47	At4g00660	DEAD/DEAH box helicase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.6494.1.A1_at	CV256344	hypothetical protein	-	2e-3	At5g03610	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-4	46	Arabidopsis thaliana	At1g14850	838050	NUP155	Encodes a protein similar to nucleoporin, a a major component of the nuclear pore complex (NPC) involved in cellular nucleo-cytoplasmic transport	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	3e-17	89	Glycine max	GmaAffx.87375.1.S1_at	BE806641	-	-	9e-12	At1g14850	NUP155	C.G.	S.X.	Please select
0.03	9e+0	30	Hordeum vulgare	EBpi01_SQ004_E18_at	EBpi01_SQ004_E18	-	-	3e+0	At3g09500	60S ribosomal protein L35 (RPL35A)	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os07g0143550	9635.m00435	-	-	3e+0	At4g29630	cytidine deaminase, putative / cytidine aminohydrolase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Triticum aestivum	Ta.9437.2.S1_a_at	CA732724	-	-	6e-2	At5g43100	aspartyl protease family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1615416_at	CD715350	-	-	1e+0	At4g02520	ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2)	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	Zm.6778.2.A1_at	AI770701	-	-	8e-4	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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