Gene omics information

Query gene ID	PtpAffx.82259.1.A1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	93.6	PtpAffx.82259.1.A1_s_at	CV254342	hypothetical protein	-	4e-50	At1g20880	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.205901.1.S1_s_at	pmrna11698	hypothetical protein	-	1e-54	At1g20880	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.221077.1.S1_at	pmrna37656	hypothetical protein	-	1e-23	At2g44730	transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.153212.1.A1_at	CV266013	hypothetical protein	-	3e-2	At4g18880	AT-HSFA4A	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.11623.1.A1_at	CV260515	hypothetical protein	-	8e-25	At5g09850	transcription elongation factor-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.150530.1.S1_at	CX187047	hypothetical protein	-	8e-6	At4g00355	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.5	99.0	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.4	97.0	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1243	PtpAffx.82259.1.A1_at	CV254342	hypothetical protein	-	4e-50	At1g20880	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.53	0	904	PtpAffx.205901.1.S1_at	pmrna11698	hypothetical protein	-	1e-54	At1g20880	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.53	0	904	PtpAffx.205901.1.S1_s_at	pmrna11698	hypothetical protein	-	1e-54	At1g20880	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	4e-94	345	Ptp.3497.1.S1_at	CX172227	hypothetical protein	-	6e-4	At1g20880	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	8e-15	81	PtpAffx.4558.2.A1_at	CV234584	hypothetical protein	-	2e-24	At1g22910	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	5e-13	75	Ptp.6298.1.S1_at	BU896361	hypothetical protein	-	3e-26	At1g22910	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	1e-10	67	PtpAffx.4558.3.A1_at	CV265633	hypothetical protein	-	3e-20	At1g22910	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	8e-9	61	PtpAffx.211648.1.S1_at	pmrna22822	hypothetical protein	-	6e-22	At2g46780	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	8e-9	61	PtpAffx.211648.1.S1_x_at	pmrna22822	hypothetical protein	-	6e-22	At2g46780	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	4e-50	198	Arabidopsis thaliana	At1g20880	838681	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	1e-32	141	Glycine max	Gma.6832.1.S1_at	BU550964	-	-	1e-11	At1g20880	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	6e-1	34	Hordeum vulgare	Contig10395_at	Contig10395	-	-	3e-1	At2g36300	integral membrane Yip1 family protein	C.G.	S.X.	Please select
0.09	1e-5	52	Oryza sativa	Os01g0876800	BI804947	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	3e+0	At5g28770	BZO2H3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Triticum aestivum	Ta.9075.1.S1_at	BQ170302	-	-	6e-15	At1g22910	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.09	7e-12	69	Vitis vinifera	1611556_at	CB913062	-	-	7e+0	At1g76460	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.05	1e-11	69	Zea mays	Zm.1141.2.A1_at	BM351386	hypothetical protein LOC100276557	-	9e-14	At1g22910	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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