Gene omics information

Query gene ID	PtpAffx.81117.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.81117.1.S1_at	BU818991	-	-	4e+0	At5g41761	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.81117.2.S1_at	CK318012	-	-	9e-19	At4g12130	aminomethyltransferase	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	Ptp.51.1.A1_at	CV257322	hypothetical protein	-	3e-9	At5g12310	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.63326.1.A1_at	CV244522	hypothetical protein	-	5e-16	At2g35100	ARAD1 (ARABINAN DEFICIENT 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.91626.1.S1_at	DN486285	hypothetical protein	-	2e-30	At1g26470	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.135.1.S1_a_at	DN486180	hypothetical protein	-	4e-5	At5g61500	ATG3	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.9	98.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.0	98.0	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.0	97.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3	95.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	960	PtpAffx.81117.1.S1_a_at	BU818991	hypothetical protein	-	4e+0	At5g41761	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	2e-110	398	PtpAffx.81117.2.S1_at	CK318012	-	-	9e-19	At4g12130	aminomethyltransferase	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	1e-19	97	Ptp.7374.1.S1_at	CK091781	hypothetical protein	-	2e+0	At4g11876	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	9e-2	38	PtpAffx.216821.1.S1_s_at	pmrna31856	hypothetical protein	-	3e-8	At1g66280	BGLU22	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	9e-2	38	PtpAffx.204078.1.S1_s_at	pmrna8052	hypothetical protein	-	4e-5	At5g42260	BGLU12 (BETA GLUCOSIDASE 12)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	9e-2	38	PtpAffx.204078.1.S1_at	pmrna8052	hypothetical protein	-	4e-5	At5g42260	BGLU12 (BETA GLUCOSIDASE 12)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.225274.1.S1_at	pmrna44503	-	-	2e+0	At4g25050	ACP4 (acyl carrier protein 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.225275.1.S1_s_at	pmrna44504	-	-	4e+0	At4g38060	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.225276.1.S1_at	pmrna44505	cc-nbs-lrr resistance protein	-	2e+0	At5g42790	PAF1	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At5g41761	6241304	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.62699.1.S1_at	BE440946	-	-	4e-18	At1g08550	NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1)	C.G.	S.X.	Please select
0.04	8e+0	30	Hordeum vulgare	Contig24078_at	Contig24078	-	-	4e+0	At3g27080	TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)	C.G.	S.X.	Please select
0.04	8e+0	32	Oryza sativa	OsAffx.12717.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Triticum aestivum	TaAffx.42560.1.S1_at	BJ217845	-	-	8e-1	At2g40670	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	C.G.	S.X.	Please select
0.14	2e-11	67	Vitis vinifera	1611496_at	CF210499	hypothetical protein LOC100245510	-	1e+0	At2g43930	protein kinase family protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	Zm.321.1.S1_at	CF006447	basal layer antifungal peptide	-	3e-1	At5g57370	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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