Gene omics information

Query gene ID	PtpAffx.811.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	97.0	PtpAffx.811.1.S1_x_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.811.1.S1_s_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.811.1.S1_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.943.1.A1_at	CV261187	hypothetical protein	-	1e-1	At2g30230	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.109937.1.A1_at	CK097441	NAC domain protein, IPR003441	-	4e-1	At4g24700	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	Ptp.5480.1.S1_at	CV231040	-	-	5e-2	At2g43060	transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.6	99.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
14.4	99.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	4373	PtpAffx.811.1.S1_s_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.99	0	4373	PtpAffx.811.1.S1_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.38	2e-176	621	PtpAffx.122746.1.S1_s_at	BU823144	hypothetical protein	-	2e+0	At2g31985	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	2e-135	484	PtpAffx.2548.2.A1_s_at	CK097357	hypothetical protein	-	1e-7	At3g01680	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.27	4e-134	480	PtpAffx.811.5.A1_at	CV271621	hypothetical protein	-	4e+0	At2g35790	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	4e-97	357	PtpAffx.2548.1.A1_at	CV259452	-	-	4e-12	At1g76690	OPR2	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	2e-61	238	PtpAffx.811.4.A1_at	DN490126	hypothetical protein	-	4e-3	At3g01680	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-7	57	PtpAffx.159923.1.A1_at	CV255149	-	-	1e+0	At2g26160	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	8e-6	54	PtpAffx.162761.1.S1_at	DN496154	hypothetical protein	-	2e+0	At5g56470	FAD-dependent oxidoreductase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-9	65	Arabidopsis thaliana	At3g01680	821097	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	36	Glycine max	GmaAffx.10323.1.S1_at	BI971552	-	-	1e+0	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	C.G.	S.X.	Please select
0.01	2e+0	34	Hordeum vulgare	HVSMEk0007F09f_at	HVSMEk0007F09f	-	-	6e-85	Atmg01170	-	C.G.	S.X.	Please select
0.01	1e+1	34	Oryza sativa	Os09g0260101	9637.m00627	-	-	2e+0	At1g02620	GTP-binding protein (SAR1A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	2e+1	32	Triticum aestivum	TaAffx.85537.3.S1_at	CA621889	-	-	3e-1	At1g03170	unknown protein	C.G.	S.X.	Please select
0.04	1e-4	48	Vitis vinifera	1616685_at	CF211776	hypothetical protein LOC100244128	-	2e+0	At4g24990	ATGP4	C.G.	S.X.	Please select
0.01	5e-1	36	Zea mays	ZmAffx.118.1.S1_at	AI665643	-	-	8e-1	At5g59470	PQ-loop repeat family protein / transmembrane family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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