CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.8033.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 87.0 PtpAffx.8033.1.S1_s_at CV233130 hypothetical protein - 1e-64 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) S.X. H.G.
0.38 63.7 PtpAffx.86153.1.A1_at CA821472 hypothetical protein - 7e-4 At2g02040 PTR2 (PEPTIDE TRANSPORTER 2) S.X. H.G.
0.28 50.5 PtpAffx.207131.1.S1_at pmrna14147 - - 2e-40 At2g22120 protein binding / zinc ion binding S.X. H.G.
0.18 30.8 Ptp.8043.1.S1_s_at DN497888 hypothetical protein - 4e-10 At3g56440 AtATG18d S.X. H.G.
0.13 21.6 Ptp.7187.1.S1_at CF234904 hypothetical protein - 7e-50 At5g47960 ATRABA4C S.X. H.G.
0.13 21.6 PtpAffx.108517.1.A1_at CV236445 hypothetical protein - 3e-14 At5g35460 unknown protein S.X. H.G.
0.10 16.3 PtpAffx.1445.1.A1_at AJ770541 hypothetical protein - 2e-14 At3g11397 PRA1.A3 (PRENYLATED RAB ACCEPTOR 1.A3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.2 95.6 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9 92.5 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4 90.4 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 0 1013 PtpAffx.8033.2.A1_at CV228249 hypothetical protein - 2e-49 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.45 2e-131 470 PtpAffx.8033.3.S1_a_at CV233684 hypothetical protein - 3e-57 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.31 4e-34 147 PtpAffx.22648.1.A1_at DN493055 - - 2e-1 At3g27650 LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) C.G. S.X.
0.02 3e-1 38 Ptp.598.1.A1_at CV281520 hypothetical protein - 4e-1 At3g16680 DNA binding / DNA-directed RNA polymerase C.G. S.X.
0.02 3e-1 38 Ptp.598.1.A1_a_at CV281520 hypothetical protein - 4e-1 At3g16680 DNA binding / DNA-directed RNA polymerase C.G. S.X.
0.01 3e-1 38 Ptp.1542.1.S1_s_at CV225988 hypothetical protein - 1e-11 At4g24220 VEP1 (VEIN PATTERNING 1) C.G. S.X.
0.01 3e-1 38 Ptp.1542.1.S1_at CV225988 hypothetical protein - 1e-11 At4g24220 VEP1 (VEIN PATTERNING 1) C.G. S.X.
0.01 1e+0 36 PtpAffx.655.1.A1_at CV237213 hypothetical protein - 5e-20 At5g42760 - C.G. S.X.
0.02 4e+0 34 PtpAffx.67651.1.A1_at DN489990 hypothetical protein - 4e+0 At5g47280 ADR1-L3 (ADR1-like 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 1e-64 248 Arabidopsis thaliana At5g12370 831112 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) F:molecular_function unknown;P:exocytosis, vesicle docking;C:plasma membrane, membrane, exocyst;FMPOB - - - C.G. S.X.
0.18 5e-46 186 Glycine max GmaAffx.19843.1.S1_at BU550809 - - 2e+0 At3g60966 protein binding / zinc ion binding C.G. S.X.
0.22 1e-31 137 Hordeum vulgare Contig6653_at Contig6653 - - 2e-17 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.18 5e-28 127 Oryza sativa Os12g0238100 AK064983.1 - Exocyst complex component Sec10 family protein 6e-40 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.22 4e-24 113 Triticum aestivum Ta.3597.1.S1_at BQ166709 - - 1e-6 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.48 2e-115 414 Vitis vinifera 1620709_at CB918852 - - 1e-65 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.02 5e+0 32 Zea mays ZmAffx.979.1.A1_at AI833962 UBP26 - 8e-1 At3g15140 exonuclease family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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