Gene omics information

Query gene ID	PtpAffx.8017.1.S1_s_at
Gene name	NAC domain protein, IPR003441
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	82.2	PtpAffx.8017.1.S1_s_at	CF229161	NAC domain protein, IPR003441	-	1e+0	At1g67025	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.109937.1.A1_at	CK097441	NAC domain protein, IPR003441	-	4e-1	At4g24700	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.811.1.S1_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.811.1.S1_x_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.811.1.S1_s_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.213954.1.S1_at	pmrna27198	pho1-like protein	-	3e-13	At2g03260	EXS family protein / ERD1/XPR1/SYG1 family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.4	99.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
8.2	98.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.4	97.7	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3	95.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	0	983	PtpAffx.202192.1.S1_at	pmrna4386	-	-	3e-1	At3g28700	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	3e-18	93	PtpAffx.211500.1.S1_s_at	pmrna22537	NAC domain protein, IPR003441 /// NAC domain protein, IPR003441 /// hypothetical protein	-	2e-1	At4g24700	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	3e-18	93	PtpAffx.211500.1.S1_at	pmrna22537	NAC domain protein, IPR003441	-	2e-1	At4g24700	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	2e-9	63	PtpAffx.35533.1.S1_at	CV258042	NAC domain protein, IPR003441	-	2e+0	At5g38100	methyltransferase-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-2	40	PtpAffx.211940.1.S1_at	pmrna23445	hypothetical protein	-	2e-113	At2g04270	RNEE/G (RNASE E/G-LIKE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-2	40	PtpAffx.202312.1.S1_at	pmrna4630	NAC domain protein, IPR003441	-	1e-1	At1g72770	HAB1 (HOMOLOGY TO ABI1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.222213.1.S1_at	pmrna39478	hypothetical protein	-	2e-1	At4g00210	LBD31 (LOB DOMAIN-CONTAINING PROTEIN 31)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.215764.1.S1_s_at	pmrna30144	hypothetical protein	-	6e-1	At3g29330	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.215764.1.S1_at	pmrna30144	hypothetical protein	-	6e-1	At3g29330	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g67025	843021	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	Gma.11431.1.A1_at	BE820307	-	-	8e-1	At3g56240	CCH (COPPER CHAPERONE)	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig18381_at	Contig18381	-	-	7e-1	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	Os10g0427100	AK120192.1	-	Conserved hypothetical protein	3e-1	At2g27740	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Triticum aestivum	TaAffx.30056.1.S1_at	CA629687	-	-	2e-1	At1g75720	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1617043_at	CF514790	hypothetical protein LOC100255806	-	4e+0	At5g65120	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	ZmAffx.1372.1.S1_at	40794996-160	-	-	7e-1	At2g34355	nodulin-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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