CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.80014.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 84.2 PtpAffx.80014.1.S1_at CV264509 hypothetical protein - 1e-24 At3g62600 ATERDJ3B S.X. H.G.
0.56 83.9 Ptp.7907.1.A1_at CV270651 Ca2+ antiporter/cation exchanger - 2e-24 At1g08960 CAX11 S.X. H.G.
0.50 78.6 PtpAffx.123754.2.A1_at CV268274 hypothetical protein - 7e-36 At5g60160 aspartyl aminopeptidase, putative S.X. H.G.
0.48 75.4 Ptp.5941.1.S1_at BU813329 hypothetical protein - 9e-46 At3g03890 FMN binding S.X. H.G.
0.32 55.2 PtpAffx.59908.1.A1_at CK094395 - - 4e+0 At3g51260 PAD1 (20s proteasome alpha subunit pad1) S.X. H.G.
0.32 55.2 PtpAffx.1688.1.S1_at CV263511 hypothetical protein - 2e-9 At3g26780 catalytic S.X. H.G.
0.29 50.5 PtpAffx.162289.1.S1_at BI126261 hypothetical protein - 2e-12 At1g78620 integral membrane family protein S.X. H.G.
0.25 43.6 PtpAffx.94786.1.A1_at CV271627 - - 5e-26 At3g54610 GCN5 S.X. H.G.
0.21 36.5 Ptp.5659.1.S1_at CK088474 high mobility group family - 1e-25 At2g34450 high mobility group (HMG1/2) family protein S.X. H.G.
0.20 34.6 PtpAffx.18469.1.S1_at BU888918 hypothetical protein - 6e+0 At5g65070 MAF4 (MADS AFFECTING FLOWERING 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.4 98.2 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.6 97.2 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.2 96.8 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 3e-161 569 Ptp.678.1.A1_at BU835335 hypothetical protein - 4e+0 At4g03298 unknown protein C.G. S.X.
0.32 2e-113 410 Ptp.4777.1.S1_at AJ769514 hypothetical protein - 2e-24 At3g62600 ATERDJ3B C.G. S.X.
0.35 6e-107 389 Ptp.1657.1.A1_at CK092723 - - 3e+0 At5g63870 PP7 (SERINE/THREONINE PHOSPHATASE 7) C.G. S.X.
0.03 4e-6 54 PtpAffx.207101.1.S1_at pmrna14077 hypothetical protein - 6e-38 At4g39960 DNAJ heat shock family protein C.G. S.X.
0.04 3e-4 48 PtpAffx.217741.1.S1_at pmrna33126 hypothetical protein - 3e-1 At5g41270 - C.G. S.X.
0.03 4e-3 44 PtpAffx.215527.1.S1_at pmrna29778 hypothetical protein - 1e-35 At3g08910 DNAJ heat shock protein, putative C.G. S.X.
0.02 4e-3 44 PtpAffx.205170.1.S1_at pmrna10236 hypothetical protein - 4e-30 At4g39960 DNAJ heat shock family protein C.G. S.X.
0.03 2e-2 42 PtpAffx.200281.1.S1_at pmrna558 hypothetical protein - 7e-10 At5g59610 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.04 2e-2 42 PtpAffx.157113.1.S1_s_at BU821164 hypothetical protein - 3e-6 At5g59610 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 1e-24 115 Arabidopsis thaliana At3g62600 825434 ATERDJ3B J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. - - - C.G. S.X.
0.31 1e-89 331 Glycine max Gma.2546.1.S1_at CA783454 - - 6e-35 At3g62600 ATERDJ3B C.G. S.X.
0.17 5e-31 135 Hordeum vulgare Contig7280_at Contig7280 - - 3e-12 At3g62600 ATERDJ3B C.G. S.X.
0.23 1e-25 119 Oryza sativa Os05g0156500 AK062718.1 - Apobec-1 binding protein 2 2e-10 At3g62600 ATERDJ3B C.G. S.X.
0.19 1e-24 115 Triticum aestivum Ta.8128.1.S1_x_at BQ161382 - - 4e-12 At3g62600 ATERDJ3B C.G. S.X.
0.41 1e-95 349 Vitis vinifera 1620520_s_at BQ797142 hypothetical protein LOC100252105 - 2e-23 At3g62600 ATERDJ3B C.G. S.X.
0.25 3e-10 65 Zea mays Zm.5074.1.A1_at AI600716 - - 5e-14 At3g62600 ATERDJ3B C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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