CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.7997.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.7997.1.S1_at BU868664 hypothetical protein - 2e-10 At2g46830 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) S.X. H.G.
0.63 88.1 PtpAffx.92960.1.S1_at AI161873 hypothetical protein - 2e-2 At2g01660 PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6) S.X. H.G.
0.63 88.1 PtpAffx.161640.1.S1_at CK106613 hypothetical protein - 8e-2 At1g11980 RUB3 (UBIQUITIN-RELATED PROTEIN 3) S.X. H.G.
0.56 83.9 PtpAffx.154816.1.S1_at CN522772 mtn21-like protein - 5e-6 At5g19290 esterase/lipase/thioesterase family protein S.X. H.G.
0.38 63.7 PtpAffx.150917.1.S1_at CK103462 hypothetical protein - 1e-28 At5g63860 UVR8 (UVB-RESISTANCE 8) S.X. H.G.
0.38 63.7 PtpAffx.65505.1.S1_at CK106338 - - 2e-8 At3g02580 STE1 (STEROL 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.2 99.7 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
12.6 99.3 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.6 99.2 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.9 98.9 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.2 98.5 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6 94.5 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 PtpAffx.92119.1.S1_at BU862791 hypothetical protein - 7e-3 At3g15810 unknown protein C.G. S.X.
0.01 8e-1 36 PtpAffx.218225.1.S1_at pmrna33775 hypothetical protein - 1e-12 At5g17160 unknown protein C.G. S.X.
0.02 3e+0 34 PtpAffx.33585.1.A1_at CA927699 hypothetical protein - 5e+0 At5g43280 ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1) C.G. S.X.
0.02 3e+0 34 PtpAffx.2334.2.A1_a_at CV245546 hypothetical protein - 2e-28 At1g17890 GER2 C.G. S.X.
0.02 3e+0 34 PtpAffx.214830.1.S1_at pmrna28707 hypothetical protein - 4e-1 At2g01240 reticulon family protein (RTNLB15) C.G. S.X.
0.01 3e+0 34 PtpAffx.201562.1.S1_at pmrna3066 hypothetical protein - 2e-2 At2g17110 unknown protein C.G. S.X.
0.02 3e+0 34 PtpAffx.200315.1.S1_at pmrna625 hypothetical protein - 1e-1 At5g61620 myb family transcription factor C.G. S.X.
0.02 3e+0 34 PtpAffx.158774.2.S1_s_at CN519385 hypothetical protein - 4e-44 At3g09600 myb family transcription factor C.G. S.X.
0.02 3e+0 34 PtpAffx.158774.2.S1_at CN519385 hypothetical protein - 4e-44 At3g09600 myb family transcription factor C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 2e-10 67 Arabidopsis thaliana At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. - - - C.G. S.X.
0.30 6e-51 202 Glycine max GmaAffx.3765.2.A1_at BF066505 MYB transcription factor MYB114 - 1e-10 At2g46830 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) C.G. S.X.
0.06 3e-16 85 Hordeum vulgare Contig3873_at Contig3873 - - 3e-20 At1g01060 LHY (LATE ELONGATED HYPOCOTYL) C.G. S.X.
0.09 9e-17 89 Oryza sativa Os08g0157600 AY452478.1 - Myb, DNA-binding domain containing protein 5e-31 At1g01060 LHY (LATE ELONGATED HYPOCOTYL) C.G. S.X.
0.02 2e+0 34 Triticum aestivum Ta.25653.1.A1_at CD373707 - - 1e+0 At5g26070 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.11 1e-30 133 Vitis vinifera 1607032_s_at CB345316 hypothetical protein LOC100250535 - 2e-18 At1g01060 LHY (LATE ELONGATED HYPOCOTYL) C.G. S.X.
0.07 7e-14 77 Zea mays Zm.7073.2.A1_at AI600777 - - 1e-2 At5g37260 RVE2 (REVEILLE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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