Gene omics information

Query gene ID	PtpAffx.79920.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	84.2	PtpAffx.79920.1.A1_at	CK090376	hypothetical protein	-	1e+0	At5g59845	gibberellin-regulated family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.90356.2.A1_a_at	CV271797	hypothetical protein	-	2e-15	At1g62850	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.1002.1.A1_at	CV241951	hypothetical protein	-	2e+0	At1g23730	BCA3 (BETA CARBONIC ANHYDRASE 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.120762.1.A1_at	CV262910	hypothetical protein	-	6e-3	At2g42975	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.22589.1.A1_at	CV276606	hypothetical protein	-	2e+0	At3g01230	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.122.1.S1_at	CK100070	-	-	2e-39	At4g22200	AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3)	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.0	99.4	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
12.1	99.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
10.0	98.9	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.4	98.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.5	98.3	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1	95.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	5e-84	311	PtpAffx.1627.1.S1_a_at	AJ767188	hypothetical protein	-	3e-18	At2g43010	PIF4 (phytochrome interacting factor 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.208711.1.S1_at	pmrna17274	hypothetical protein	-	2e-53	At1g70070	EMB25 (EMBRYO DEFECTIVE 25)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.207648.1.S1_at	pmrna15173	hypothetical protein	-	0	At5g60390	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	32	PtpAffx.7185.1.S1_at	CV268842	hypothetical protein	-	9e-8	At1g34320	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	32	PtpAffx.69545.1.A1_at	CV253683	glycosyl transferase, CAZy family GT43	-	1e+0	At2g48040	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	32	PtpAffx.51027.1.S1_at	CK095233	-	-	2e+0	At5g64120	peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	8e+0	32	PtpAffx.31552.1.A1_a_at	CV230942	hypothetical protein	-	1e+0	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	32	PtpAffx.31378.1.A1_s_at	CV279321	hypothetical protein	-	1e-19	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e+0	32	PtpAffx.222748.1.S1_at	pmrna40375	hypothetical protein	-	3e-4	At1g18590	SOT17 (SULFOTRANSFERASE 17)	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g59845	836106	gibberellin-regulated family protein	F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e+0	32	Glycine max	GmaAffx.23937.1.A1_at	BG155414	-	-	6e-2	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.04	1e+1	30	Hordeum vulgare	HW01L13u_x_at	HW01L13u	-	-	1e+0	At3g53490	unknown protein	C.G.	S.X.	Please select
0.03	7e-1	36	Oryza sativa	Os03g0787100	AK110858.1	-	Hypothetical protein	2e-3	At3g44150	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+1	30	Triticum aestivum	TaAffx.65288.1.A1_at	BJ252359	-	-	3e-7	At5g24030	SLAH3 (SLAC1 HOMOLOGUE 3)	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1611738_at	CA811108	hypothetical protein LOC100259968	-	8e-39	At5g14200	3-isopropylmalate dehydrogenase, chloroplast, putative	C.G.	S.X.	Please select
0.03	9e+0	30	Zea mays	Zm.2179.1.S1_at	BF727817	-	-	2e+0	At5g22520	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage