Gene omics information

Query gene ID	PtpAffx.79594.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	PtpAffx.79594.1.S1_s_at	CK098523	hypothetical protein	-	2e-20	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.907.1.A1_at	CV277484	hypothetical protein	-	4e-32	At4g19160	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.213643.1.S1_at	pmrna26649	hypothetical protein	-	1e-8	At5g61520	hexose transporter, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.16691.2.S1_a_at	CV272539	hypothetical protein	-	2e-8	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.211669.1.S1_x_at	pmrna22876	hypothetical protein	-	9e-6	At2g46940	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.249.113.S1_at	CV280925	hypothetical protein	-	6e+0	At5g23140	NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.2	98.8	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
8.3	98.5	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.4	97.7	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.3	97.7	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.1	96.8	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.2	95.6	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.7	94.7	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.6	94.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	793	Ptp.5565.1.S1_at	CK087680	hypothetical protein	-	3e-40	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	5e-13	75	PtpAffx.213058.1.S1_at	pmrna25552	hypothetical protein	-	8e-1	At5g39650	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	PtpAffx.200951.1.S1_at	pmrna1868	hypothetical protein	-	5e-47	At5g14550	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.152512.1.A1_s_at	CV276471	hypothetical protein	-	5e-7	At2g46180	GC4 (golgin candidate 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.156345.1.S1_at	DN501883	-	-	2e+0	At5g24080	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	Ptp.7862.1.S1_at	DN485738	hypothetical protein	-	7e-35	At3g02230	RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e+0	32	PtpAffx.87557.1.S1_s_at	CX171293	hypothetical protein	-	2e-13	At5g62190	PRH75	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e+0	32	PtpAffx.802.2.S1_at	CV272843	-	-	1e-3	At5g40070	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e+0	32	PtpAffx.765.1.A1_at	CV276457	hypothetical protein	-	3e-16	At3g04520	THA2 (Threonine Aldolase 2)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	2e-20	99	Arabidopsis thaliana	At5g51970	835272	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.32	2e-12	73	Glycine max	GmaAffx.84199.1.S1_at	AW201276	-	-	3e-22	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig26292_at	Contig26292	-	-	5e+0	At2g42000	plant EC metallothionein-like family 15 protein	C.G.	S.X.	Please select
0.03	6e-1	36	Oryza sativa	Os06g0634000	AK073652.1	-	Hypothetical protein	2e+0	At2g41050	PQ-loop repeat family protein / transmembrane family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Triticum aestivum	Ta.10393.1.S1_at	BJ245392	-	-	2e-2	At5g47090	unknown protein	C.G.	S.X.	Please select
0.48	3e-54	210	Vitis vinifera	1612918_at	CA808864	L-idonate dehydrogenase	-	7e-21	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.12361.1.S1_at	BQ744964	-	-	5e+0	At5g39190	GER2 (GERMIN-LIKE PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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