Gene omics information

Query gene ID PtpAffx.79516.1.S1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1PtpAffx.79516.1.S1_atAY780430.1--7e-16At3g16720ATL2S.X.H.G.
0.7794.9Ptp.3747.1.S1_s_atDN488219AP2/ERF domain-containing transcription factor-2e-1At5g43410ethylene-responsive factor, putativeS.X.H.G.
0.6791.1Ptp.866.1.S1_s_atCK093360AP2/ERF domain-containing transcription factor-6e-7At1g28160ethylene-responsive element-binding family proteinS.X.H.G.
0.6791.1Ptp.3335.1.S1_s_atBU815946--9e-1At5g27690heavy-metal-associated domain-containing proteinS.X.H.G.
0.5582.2Ptp.3082.1.S1_s_atCF232410hypothetical protein-6e-1At3g5954060S ribosomal protein L38 (RPL38B)S.X.H.G.
0.4673.7Ptp.6284.1.S1_atBU815355hypothetical protein-2e-13At5g58620zinc finger (CCCH-type) family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.199.6GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
11.499.2GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
8.198.5GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
5.797.3GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
3.894.9GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
3.794.7GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue series
3.594.3GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
2.892.1GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
2.691.3GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
2.389.8GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.452e-119430Ptp.3744.1.S1_s_atBU892630hypothetical protein-1e-9At3g16720ATL2C.G.S.X.
0.345e-73276Ptp.7381.1.S1_atCV256673hypothetical protein-5e+0At5g47590heat shock protein-relatedC.G.S.X.
0.022e-448PtpAffx.214422.1.S1_atpmrna28052hypothetical protein-3e-12At4g30400zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.016e-240PtpAffx.206554.1.S1_atpmrna13002hypothetical protein-8e-10At4g30400zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.022e-138PtpAffx.220747.1.S1_atpmrna37168hypothetical protein-1e+1At3g24350SYP32 (SYNTAXIN OF PLANTS 32)C.G.S.X.
0.029e-136PtpAffx.86833.1.A1_atBU887507hypothetical protein-9e-5At3g53600zinc finger (C2H2 type) family proteinC.G.S.X.
0.029e-136PtpAffx.39700.1.S1_atCF229096--3e+0At1g63970ISPFC.G.S.X.
0.019e-136PtpAffx.224521.1.S1_atpmrna43140hypothetical protein-2e-6At4g32710ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseC.G.S.X.
0.039e-136PtpAffx.221356.1.S1_atpmrna38208hypothetical protein-1e+0At2g20680glycosyl hydrolase family 5 protein / cellulase family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.197e-1685Arabidopsis thalianaAt3g16720820924ATL2RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations.---C.G.S.X.
0.083e-1377Glycine maxGmaAffx.53152.1.S1_atBE823592--6e-7At3g16720ATL2C.G.S.X.
0.035e+032Hordeum vulgareContig26273_atContig26273--2e-15At5g67320HOS15 (high expression of osmotically responsive genes 15)C.G.S.X.
0.023e-138Oryza sativaOs06g0192800AK070038.1-Zn-finger, RING domain containing protein3e-3At5g05280zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.022e-138Triticum aestivumTaAffx.107021.1.S1_atCA707574--3e-3At4g15975protein binding / zinc ion bindingC.G.S.X.
0.098e-1063Vitis vinifera1622773_atCF605812hypothetical protein LOC100253381-2e-2At4g15975protein binding / zinc ion bindingC.G.S.X.
0.041e+034Zea maysZm.8037.1.A1_atBM073083--1e+0At5g58580ATL63 (ARABIDOPSIS TÓC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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