CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.78955.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.78955.1.S1_at BU876794 hypothetical protein - 6e-55 At4g24550 clathrin adaptor complexes medium subunit family protein S.X. H.G.
0.77 94.9 PtpAffx.42470.1.S1_s_at CA822465 hypothetical protein - 1e-14 At5g46630 clathrin adaptor complexes medium subunit family protein S.X. H.G.
0.73 93.6 PtpAffx.144831.1.S1_s_at DN500152 hypothetical protein - 8e-74 At5g42080 ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN) S.X. H.G.
0.57 84.2 PtpAffx.17757.2.S1_s_at BI138883 hypothetical protein - 2e-33 At3g02420 unknown protein S.X. H.G.
0.40 67.0 PtpAffx.1066.10.S1_a_at CX178751 hypothetical protein - 2e-34 At5g05010 clathrin adaptor complexes medium subunit-related S.X. H.G.
0.38 63.7 PtpAffx.3847.4.A1_s_at BU820394 hypothetical protein - 2e-15 At1g13320 PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 95.3 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.9 92.5 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 8e-3 42 PtpAffx.135757.1.S1_at BP925410 hypothetical protein - 3e-66 At1g60780 HAP13 (HAPLESS 13) C.G. S.X.
0.02 5e-1 36 PtpAffx.75226.1.A1_at CV248057 hypothetical protein - 1e-11 At4g02340 epoxide hydrolase, putative C.G. S.X.
0.01 5e-1 36 PtpAffx.201849.1.S1_at pmrna3677 hypothetical protein - 3e-2 At1g77300 EFS (EARLY FLOWERING IN SHORT DAYS) C.G. S.X.
0.02 2e+0 34 PtpAffx.27294.1.S1_at DN493249 - - 3e-2 At1g61280 - C.G. S.X.
0.02 2e+0 34 Ptp.7830.1.S1_at DN499779 hypothetical protein - 4e-2 At1g17710 phosphatase C.G. S.X.
0.01 2e+0 34 Ptp.5709.1.S1_s_at AY935507.1 - - 4e-9 At3g45400 exostosin family protein C.G. S.X.
0.03 7e+0 32 PtpAffx.93354.1.A1_at DN487764 NAC domain protein, IPR003441 - 8e-2 At2g43000 anac042 (Arabidopsis NAC domain containing protein 42) C.G. S.X.
0.02 7e+0 32 PtpAffx.47971.1.S1_at DN492834 - - 2e+0 At4g32915 - C.G. S.X.
0.01 7e+0 32 PtpAffx.225185.1.S1_at pmrna44339 tir-nbs-lrr resistance protein - 1e-1 At5g44870 disease resistance protein (TIR-NBS-LRR class), putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 6e-55 214 Arabidopsis thaliana At4g24550 828557 clathrin adaptor complexes medium subunit family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat, clathrin adaptor complex;MFOP - - - C.G. S.X.
0.55 1e-93 343 Glycine max GmaAffx.88475.1.S1_at BM887264 - - 3e-42 At4g24550 clathrin adaptor complexes medium subunit family protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig5815_at Contig5815 - - 5e-3 At2g03870 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative C.G. S.X.
0.36 6e-32 139 Oryza sativa Os07g0620300 AK099000.1 - Clathrin adaptor complex, medium chain familyprotein 8e-23 At4g24550 clathrin adaptor complexes medium subunit family protein C.G. S.X.
0.03 9e-2 38 Triticum aestivum TaAffx.132270.1.A1_at CK211144 - - 1e+0 At5g66260 auxin-responsive protein, putative C.G. S.X.
0.04 2e-3 42 Vitis vinifera 1611526_at CF604832 hypothetical protein LOC100251026 - 8e-51 At1g10730 clathrin adaptor complexes medium subunit family protein C.G. S.X.
0.03 9e+0 30 Zea mays ZmAffx.1036.1.A1_at AI881726 - - 1e-1 At2g43795 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage