CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.7885.2.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 93.6 PtpAffx.7885.2.S1_at BI138978 hypothetical protein - 1e-103 At5g26360 chaperonin, putative S.X. H.G.
0.67 91.1 PtpAffx.15518.1.S1_a_at CV255379 hypothetical protein - 1e-10 At5g22100 RNA cyclase family protein S.X. H.G.
0.44 71.9 PtpAffx.2478.2.S1_a_at CV254743 hypothetical protein - 2e-34 At1g09640 elongation factor 1B-gamma, putative / eEF-1B gamma, putative S.X. H.G.
0.40 67.0 PtpAffx.8607.3.S1_s_at CN523134 hypothetical protein - 5e-56 At3g03960 chaperonin, putative S.X. H.G.
0.35 59.7 PtpAffx.124616.1.S1_s_at CK099809 hypothetical protein - 4e-134 At3g02530 chaperonin, putative S.X. H.G.
0.32 55.2 Ptp.5545.1.S1_s_at CN524341 hypothetical protein - 2e-47 At3g09630 60S ribosomal protein L4/L1 (RPL4A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.2 95.6 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.61 1e-163 577 PtpAffx.7885.1.S1_a_at CK111948 hypothetical protein - 2e-24 At5g26360 chaperonin, putative C.G. S.X.
0.61 1e-163 577 PtpAffx.7885.1.S1_at CK111948 hypothetical protein - 2e-24 At5g26360 chaperonin, putative C.G. S.X.
0.24 8e-69 262 PtpAffx.7885.3.S1_at BU836787 hypothetical protein - 5e-5 At5g26360 chaperonin, putative C.G. S.X.
0.08 7e-17 89 Ptp.715.2.A1_at CV271211 hypothetical protein - 8e-80 At5g26360 chaperonin, putative C.G. S.X.
0.01 2e-1 38 PtpAffx.23691.1.S1_at CV242542 cellulose synthase - 3e-146 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) C.G. S.X.
0.01 2e-1 38 PtpAffx.213885.1.S1_at pmrna27077 hypothetical protein - 5e-101 At5g14950 GMII (GOLGI ALPHA-MANNOSIDASE II) C.G. S.X.
0.02 2e-1 38 PtpAffx.202330.1.S1_at pmrna4666 hypothetical protein - 9e-1 At4g22930 PYR4 (PYRIMIDIN 4) C.G. S.X.
0.02 2e-1 38 Ptp.5960.1.S1_at CK089599 - - 1e+0 At5g14000 anac084 (Arabidopsis NAC domain containing protein 84) C.G. S.X.
0.01 9e-1 36 PtpAffx.5630.2.A1_at CV245796 - - 2e+0 At3g16070 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 1e-103 377 Arabidopsis thaliana At5g26360 832705 chaperonin, putative F:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:unknown;BOMFPAV - - - C.G. S.X.
0.24 2e-14 81 Glycine max GmaAffx.68649.1.S1_at BG238929 - - 1e-32 At5g26360 chaperonin, putative C.G. S.X.
0.08 3e-4 46 Hordeum vulgare Contig9215_at Contig9215 - - 8e-16 At5g26360 chaperonin, putative C.G. S.X.
0.44 2e-55 218 Oryza sativa Os06g0538000 AK069949.1 - Chaperonin Cpn60/TCP-1 family protein 5e-83 At5g26360 chaperonin, putative C.G. S.X.
0.35 1e-45 184 Triticum aestivum Ta.2554.1.S1_x_at CK210349 - - 1e-46 At5g26360 chaperonin, putative C.G. S.X.
0.36 8e-44 176 Vitis vinifera 1610292_at CB345949 hypothetical protein LOC100255417 - 3e-50 At5g26360 chaperonin, putative C.G. S.X.
0.30 2e-14 79 Zea mays Zm.16810.1.A1_at CF053948 T-complex protein 1 subunit gamma - 3e-32 At5g26360 chaperonin, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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