Gene omics information

Query gene ID	PtpAffx.7770.2.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.7770.2.S1_at	DN488472	-	-	6e+0	At4g12090	cornichon family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.216324.1.S1_x_at	pmrna31034	hypothetical protein	-	4e+0	At4g05553	zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	Ptp.3518.1.A1_at	DN492409	-	-	1e+0	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	Ptp.3447.1.A1_at	DN492951	-	-	2e+0	At3g06000	leucine-rich repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.144822.1.S1_at	DN500556	-	-	1e+0	At5g66650	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.214797.1.S1_at	pmrna28647	hypothetical protein	-	3e-34	At5g13650	elongation factor family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.5	100.0	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
20.2	99.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
13.3	99.4	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.0	76.2	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.8	72.0	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.7	69.4	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.7	69.4	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.6	66.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	7e-127	454	PtpAffx.7770.1.A1_at	CA934754	-	-	4e+0	At1g58460	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.61	1e-48	194	PtpAffx.121936.1.S1_at	AJ779024	-	-	1e-3	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	1e-20	101	Ptp.3447.1.A1_at	DN492951	-	-	2e+0	At3g06000	leucine-rich repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.37	2e-16	87	PtpAffx.9718.1.S1_at	BU886551	hypothetical protein	-	2e+0	At2g19980	allergen V5/Tpx-1-related family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-7	56	PtpAffx.218130.1.S1_at	pmrna33659	hypothetical protein	-	5e+0	At1g47600	BGLU34 (BETA GLUCOSIDASE 34)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-3	42	PtpAffx.26568.1.A1_at	CK091509	hypothetical protein	-	2e-22	At1g22860	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.219552.1.S1_x_at	pmrna35504	hypothetical protein	-	3e-43	At5g20250	DIN10 (DARK INDUCIBLE 10)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.219552.1.S1_at	pmrna35504	hypothetical protein	-	3e-43	At5g20250	DIN10 (DARK INDUCIBLE 10)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-1	38	PtpAffx.18588.1.S1_at	CV271046	hypothetical protein	-	0	Atcg01310	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At4g12090	826817	cornichon family protein	F:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	GmaAffx.15709.1.S1_at	CB063343	-	-	8e-4	At3g55580	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	Contig1361_at	Contig1361	-	-	3e-1	At4g02340	epoxide hydrolase, putative	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	Os03g0820300	AY286474.1	-	ZPT2-14	7e+0	At5g14910	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Triticum aestivum	TaAffx.65564.1.A1_at	BJ238674	-	-	2e-2	At4g40011	unknown protein	C.G.	S.X.	Please select
0.04	5e-1	34	Vitis vinifera	1611543_at	CB003748	-	-	7e+0	At5g48595	-	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	ZmAffx.1498.1.S1_s_at	40794996-115	-	-	9e-147	Atcg01310	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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