Gene omics information

Query gene ID PtpAffx.7770.2.S1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.7770.2.S1_atDN488472--6e+0At4g12090cornichon family proteinS.X.H.G.
0.8397.0PtpAffx.216324.1.S1_x_atpmrna31034hypothetical protein-4e+0At4g05553zinc knuckle (CCHC-type) family proteinS.X.H.G.
0.7794.9Ptp.3518.1.A1_atDN492409--1e+0At4g01895systemic acquired resistance (SAR) regulator protein NIMIN-1-relatedS.X.H.G.
0.7794.9Ptp.3447.1.A1_atDN492951--2e+0At3g06000leucine-rich repeat family proteinS.X.H.G.
0.6388.1PtpAffx.144822.1.S1_atDN500556--1e+0At5g66650unknown proteinS.X.H.G.
0.4774.6PtpAffx.214797.1.S1_atpmrna28647hypothetical protein-3e-34At5g13650elongation factor family proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
45.5100.0GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
20.299.8GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
13.399.4GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
2.590.9GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
1.583.5GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
1.076.2GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
0.872.0GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.769.4GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
0.769.4GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
0.666.6GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.257e-127454PtpAffx.7770.1.A1_atCA934754--4e+0At1g58460unknown proteinC.G.S.X.
0.611e-48194PtpAffx.121936.1.S1_atAJ779024--1e-3At5g64905PROPEP3 (Elicitor peptide 3 precursor)C.G.S.X.
0.161e-20101Ptp.3447.1.A1_atDN492951--2e+0At3g06000leucine-rich repeat family proteinC.G.S.X.
0.372e-1687PtpAffx.9718.1.S1_atBU886551hypothetical protein-2e+0At2g19980allergen V5/Tpx-1-related family proteinC.G.S.X.
0.036e-756PtpAffx.218130.1.S1_atpmrna33659hypothetical protein-5e+0At1g47600BGLU34 (BETA GLUCOSIDASE 34)C.G.S.X.
0.029e-342PtpAffx.26568.1.A1_atCK091509hypothetical protein-2e-22At1g22860unknown proteinC.G.S.X.
0.031e-138PtpAffx.219552.1.S1_x_atpmrna35504hypothetical protein-3e-43At5g20250DIN10 (DARK INDUCIBLE 10)C.G.S.X.
0.031e-138PtpAffx.219552.1.S1_atpmrna35504hypothetical protein-3e-43At5g20250DIN10 (DARK INDUCIBLE 10)C.G.S.X.
0.011e-138PtpAffx.18588.1.S1_atCV271046hypothetical protein-0Atcg01310-C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e+032Arabidopsis thalianaAt4g12090826817cornichon family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPO---C.G.S.X.
0.041e-138Glycine maxGmaAffx.15709.1.S1_atCB063343--8e-4At3g55580regulator of chromosome condensation (RCC1) family proteinC.G.S.X.
0.032e-136Hordeum vulgareContig1361_atContig1361--3e-1At4g02340epoxide hydrolase, putativeC.G.S.X.
0.023e+034Oryza sativaOs03g0820300AY286474.1-ZPT2-147e+0At5g14910heavy-metal-associated domain-containing proteinC.G.S.X.
0.031e-138Triticum aestivumTaAffx.65564.1.A1_atBJ238674--2e-2At4g40011unknown proteinC.G.S.X.
0.045e-134Vitis vinifera1611543_atCB003748--7e+0At5g48595-C.G.S.X.
0.021e+130Zea maysZmAffx.1498.1.S1_s_at40794996-115--9e-147Atcg01310-C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage