Gene omics information

Query gene ID	PtpAffx.7770.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.7770.1.A1_at	CA934754	-	-	4e+0	At1g58460	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.224460.1.S1_x_at	pmrna43015	hypothetical protein	-	6e-1	At2g38780	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.220631.1.S1_at	pmrna37041	hypothetical protein	-	7e-1	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.225048.1.S1_at	pmrna44125	hypothetical protein	-	2e-1	At1g48980	oxidoreductase	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.13927.1.S1_at	CX660204	hypothetical protein	-	2e-6	At5g19300	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.140514.1.A1_at	CV255394	-	-	2e-1	At1g13080	CYP71B2 (CYTOCHROME P450 71B2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
72.5	100.0	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.2	98.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.9	98.7	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.6	66.6	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.5	63.3	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.3	55.0	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.3	55.0	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.1	42.9	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
0.1	42.9	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	3e-134	480	PtpAffx.7770.2.S1_at	DN488472	-	-	6e+0	At4g12090	cornichon family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	3e-44	180	PtpAffx.112316.1.S1_at	DN502672	-	-	4e+0	At2g29125	RTFL2 (ROTUNDIFOLIA LIKE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	2e-42	174	PtpAffx.121936.1.S1_at	AJ779024	-	-	1e-3	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	4e-22	107	PtpAffx.9718.1.S1_at	BU886551	hypothetical protein	-	2e+0	At2g19980	allergen V5/Tpx-1-related family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-16	87	PtpAffx.223463.1.S1_x_at	pmrna41489	hypothetical protein	-	2e+0	At1g08270	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-16	87	PtpAffx.223463.1.S1_at	pmrna41489	hypothetical protein	-	2e+0	At1g08270	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	8e-5	50	Ptp.4942.1.S1_at	BU811889	-	-	1e+0	At5g02440	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	8e-5	50	Ptp.4942.1.S1_a_at	BU811889	-	-	1e+0	At5g02440	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.41560.2.A1_at	BP931723	hypothetical protein	-	3e+0	At5g62380	ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	34	Arabidopsis thaliana	At1g58460	842215	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	GmaAffx.15709.1.S1_at	CB063343	-	-	8e-4	At3g55580	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.02	7e+0	32	Hordeum vulgare	HVSMEi0023A02r2_at	HVSMEi0023A02r2	-	-	2e+0	At2g24150	HHP3 (heptahelical protein 3)	C.G.	S.X.	Please select
0.01	2e+0	36	Oryza sativa	Os02g0165400	9630.m00632	-	-	2e-1	At3g43291	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Triticum aestivum	TaAffx.81300.1.S1_at	CA687684	-	-	9e-1	At2g25510	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1613412_at	CF517688	-	-	1e+0	At1g66820	glycine-rich protein	C.G.	S.X.	Please select
0.02	2e+0	34	Zea mays	Zm.7596.1.A1_at	BM079087	hypothetical protein LOC100216955	-	6e+0	At5g42504	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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