CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.77318.2.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.43 69.7 PtpAffx.77318.2.S1_at CX658035 hypothetical protein - 5e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) S.X. H.G.
0.48 75.4 Ptp.4515.1.S1_s_at CV253179 hypothetical protein - 5e-79 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) S.X. H.G.
0.46 73.7 PtpAffx.211137.1.S1_at pmrna21879 hypothetical protein - 5e-8 At3g03540 NPC5 (NON-SPECIFIC PHOSPHOLIPASE C5) S.X. H.G.
0.44 71.9 PtpAffx.22865.1.S1_at DN484594 hypothetical protein - 3e-5 At3g09020 alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein S.X. H.G.
0.40 67.0 Ptp.4933.1.S1_at DN490851 hypothetical protein - 9e-19 At3g11920 glutaredoxin-related S.X. H.G.
0.29 50.5 PtpAffx.5423.1.S1_s_at CV229504 hypothetical protein - 3e-24 At4g11820 MVA1 S.X. H.G.
0.26 45.2 PtpAffx.11966.1.A1_at CV245062 hypothetical protein - 1e-1 At3g15760 unknown protein S.X. H.G.
0.15 25.3 Ptp.605.1.A1_at CK089297 - - 2e+0 At5g54150 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.0 99.1 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.2 98.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.0 98.0 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.7 97.9 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.6 96.2 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 0 847 PtpAffx.77318.1.S1_x_at CX658423 hypothetical protein - 4e-2 At2g43570 chitinase, putative C.G. S.X.
0.65 0 847 PtpAffx.77318.1.S1_at CX658423 hypothetical protein - 4e-2 At2g43570 chitinase, putative C.G. S.X.
0.32 1e-137 490 Ptp.4052.2.A1_at CV258257 - - 4e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.13 4e-36 153 PtpAffx.77318.3.S1_at DN494497 hypothetical protein - 3e-3 At2g43600 glycoside hydrolase family 19 protein C.G. S.X.
0.27 2e-22 107 PtpAffx.4.1.A1_a_at U01660.1 hypothetical protein - 4e-2 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.15 4e-14 79 PtpAffx.4.3.A1_x_at CV277108 - - 6e-2 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.13 2e-7 57 PtpAffx.2522.3.A1_at CV269821 hypothetical protein - 6e-1 At3g18160 peroxin-3 family protein C.G. S.X.
0.09 3e-6 54 PtpAffx.2522.1.A1_a_at M25337.1 hypothetical protein - 9e+0 At5g63070 40S ribosomal protein S15, putative C.G. S.X.
0.15 4e-5 50 Ptp.3754.1.A1_at DN497958 - - 7e-3 At1g02360 chitinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 5e-4 46 Arabidopsis thaliana At3g12500 820429 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. - - - C.G. S.X.
0.10 6e-4 46 Glycine max Gma.2833.1.S1_s_at AF202731.1 chitinase class I - 9e-3 At4g01700 chitinase, putative C.G. S.X.
0.11 3e-3 42 Hordeum vulgare Contig3578_at Contig3578 - - 6e+0 At1g15757 - C.G. S.X.
0.08 3e-3 44 Oryza sativa Os10g0542900 BM038035 - Chitinase (EC 3.2.1.14) (Fragment) 3e-5 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.09 1e-1 38 Triticum aestivum TaAffx.133698.1.A1_s_at BJ296326 - - 1e+0 At2g43570 chitinase, putative C.G. S.X.
0.44 4e-23 107 Vitis vinifera 1620505_at Z54234.1 chitinase class I - 2e-3 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.13 2e-4 46 Zea mays Zm.16805.3.S1_at BM381902 basic endochitinase C - 2e-10 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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