Gene omics information

Query gene ID	PtpAffx.76470.1.A1_at
Gene name	f-box family protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	91.5	PtpAffx.76470.1.A1_at	CV229100	f-box family protein	-	2e-1	At3g53100	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.222228.1.S1_s_at	pmrna39503	predicted small molecule transporter	-	9e-22	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.76403.1.A1_at	CV232143	hypothetical protein	-	3e+0	At4g19035	LCR7 (Low-molecular-weight cysteine-rich 7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.34	58.3	Ptp.4715.2.S1_s_at	CV228991	hypothetical protein	-	2e-9	At4g30160	VLN4 (ARABIDOPSIS THALIANA VILLIN 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.3171.1.S1_a_at	CK109415	hypothetical protein	-	3e-7	At3g62880	ATOEP16-4	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.149830.1.S1_at	BU895366	hypothetical protein	-	2e-70	At1g08040	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.154196.1.A1_at	CV264050	hypothetical protein	-	2e-21	At4g26510	ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.25163.1.A1_a_at	BP932897	glycosyltransferase, CAZy family GT8 /// hypothetical protein	-	2e-10	At3g62660	GATL7 (Galacturonosyltransferase-like 7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.34708.3.S1_s_at	CF237092	hypothetical protein	-	4e+0	At2g16620	protein kinase-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.3698.2.S1_at	BU894200	hypothetical protein	-	1e-82	At1g77610	glucose-6-phosphate/phosphate translocator-related	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.0	100.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
9.1	98.7	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	1e-25	117	Ptp.1963.1.S1_at	CV269324	f-box family protein	-	4e-11	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	4e-16	85	PtpAffx.69106.1.S1_at	CV270026	-	-	2e+0	At1g36622	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	6e-15	81	PtpAffx.209028.1.S1_at	pmrna17878	hypothetical protein	-	8e-1	At1g72260	THI2.1 (THIONIN 2.1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	9e-14	77	PtpAffx.88938.1.A1_at	CV245325	-	-	2e+0	At5g24170	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	9e-14	77	PtpAffx.18539.1.A1_at	CV243251	-	-	2e+0	At3g28600	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	4e-13	75	PtpAffx.225480.1.S1_at	pmrna44850	hypothetical protein	-	4e+0	At4g03960	tyrosine specific protein phosphatase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	2e-12	73	PtpAffx.374.5.S1_at	CV245835	hypothetical protein	-	8e-18	At4g01710	CRK (CROOKED)	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	6e-12	71	PtpAffx.374.6.A1_at	CV253352	-	-	4e+0	At5g59340	WOX2 (WUSCHEL RELATED HOMEOBOX 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	2e-11	69	PtpAffx.99679.1.S1_at	DN485085	-	-	6e-3	At3g27570	-	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Arabidopsis thaliana	At3g53100	824476	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-1	36	Glycine max	GmaAffx.72556.1.S1_at	BG155109	-	-	6e+0	At5g26262	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	Contig18723_at	Contig18723	-	-	1e+0	At5g13290	CRN (CORYNE)	C.G.	S.X.	Please select
0.05	7e+0	32	Oryza sativa	Os05g0317800	9633.m02282	-	-	2e-2	At3g30775	ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Triticum aestivum	Ta.11028.1.A1_x_at	BQ168407	-	-	1e+1	At5g64800	CLE21 (CLAVATA3/ESR-RELATED 21)	C.G.	S.X.	Please select
0.15	2e-8	57	Vitis vinifera	1614337_at	CF209672	-	-	4e+0	At3g12345	unknown protein	C.G.	S.X.	Please select
0.03	6e-3	40	Zea mays	Zm.1987.2.A1_at	CK827168	hypothetical protein LOC100274612	-	1e+0	At2g36817		C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage