Gene omics information

Query gene ID	PtpAffx.7625.4.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.7625.4.S1_a_at	CX174671	hypothetical protein	-	5e-24	At1g53240	malate dehydrogenase (NAD), mitochondrial	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.111048.1.S1_at	BU883776	hypothetical protein	-	2e-94	At2g22480	PFK5 (PHOSPHOFRUCTOKINASE 5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.5648.2.S1_at	CX178100	hypothetical protein	-	3e-7	At3g16480	MPPalpha (mitochondrial processing peptidase alpha subunit)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.11524.3.S1_at	CV272635	hypothetical protein	-	4e-28	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.249.481.S1_s_at	CX180108	-	-	5e-37	At5g13490	AAC2 (ADP/ATP carrier 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.5890.2.S1_at	CF232083	hypothetical protein	-	5e-3	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	97.6	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.1	97.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	3e-168	591	PtpAffx.7625.1.S1_s_at	CV256357	hypothetical protein	-	2e-53	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	4e-124	444	Ptp.2139.1.S1_a_at	CV236421	hypothetical protein	-	2e-41	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.36	1e-77	289	PtpAffx.7625.3.S1_s_at	BU876234	hypothetical protein	-	2e-20	At1g53240	malate dehydrogenase (NAD), mitochondrial	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-13	75	Ptp.1238.1.S1_at	CV276962	hypothetical protein	-	8e-75	At5g09660	PMDH2 (peroxisomal NAD-malate dehydrogenase 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	6e-12	71	PtpAffx.99685.1.S1_s_at	DN484716	hypothetical protein	-	8e-81	At3g47520	MDH (MALATE DEHYDROGENASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	1e-10	67	Ptp.3778.1.S1_s_at	CX185297	hypothetical protein	-	4e-63	At2g22780	PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-10	65	PtpAffx.216914.1.S1_at	pmrna31985	hypothetical protein	-	2e-89	At3g47520	MDH (MALATE DEHYDROGENASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.34	2e-9	63	PtpAffx.217919.1.S1_s_at	pmrna33377	hypothetical protein	-	9e-14	At1g53240	malate dehydrogenase (NAD), mitochondrial	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	2e-9	63	PtpAffx.203848.1.S1_at	pmrna7596	hypothetical protein	-	6e-10	At1g53240	malate dehydrogenase (NAD), mitochondrial	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	5e-24	111	Arabidopsis thaliana	At1g53240	841757	malate dehydrogenase (NAD), mitochondrial	F:malate dehydrogenase activity;P:response to cadmium ion, response to salt stress, response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation;C:mitochondrion, cell wall, chloroplast;BOMPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	6e-40	165	Glycine max	Gma.1268.1.S1_at	BU578999	malate dehydrogenase	-	6e-44	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	C.G.	S.X.	Please select
0.13	6e-19	93	Hordeum vulgare	Contig712_at	Contig712	-	-	5e-48	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	C.G.	S.X.	Please select
0.20	4e-23	109	Oryza sativa	Os01g0649100	AF444195.1	-	Malate dehydrogenase	1e-33	At1g53240	malate dehydrogenase (NAD), mitochondrial	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	5e-15	81	Triticum aestivum	Ta.1039.1.S1_at	BJ323055	-	-	1e-42	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	C.G.	S.X.	Please select
0.22	4e-28	123	Vitis vinifera	1622059_at	CF208844	malate dehydrogenase	-	3e-40	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	C.G.	S.X.	Please select
0.18	5e-13	73	Zea mays	Zm.4892.1.A1_a_at	AY103861.1	hypothetical protein LOC100274264 /// malate dehydrogenase2	-	3e-22	At1g53240	malate dehydrogenase (NAD), mitochondrial	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage