Gene omics information

Query gene ID	PtpAffx.7623.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.78	95.1	PtpAffx.7623.1.A1_at	CV229183	hypothetical protein	-	2e-2	At3g48800	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.54182.1.A1_at	CV249623	-	-	4e-16	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	S.X.	H.G.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.63208.1.A1_at	CV249869	hypothetical protein	-	3e-27	At1g09150	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.154196.1.A1_at	CV264050	hypothetical protein	-	2e-21	At4g26510	ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.19715.1.A1_at	CV263893	hypothetical protein	-	7e-10	At2g20230	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.49	75.7	Ptp.5410.1.S1_at	CV249787	hypothetical protein	-	2e-9	At5g16450	dimethylmenaquinone methyltransferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.152437.1.S1_at	CV254283	hypothetical protein	-	1e-69	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	Ptp.7543.2.S1_s_at	CV252885	-	-	1e-7	At5g03345	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.12433.2.A1_at	CV227666	hypothetical protein	-	5e-8	At1g21900	emp24/gp25L/p24 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.73714.1.S1_a_at	BU834475	hypothetical protein	-	3e-2	At2g37200	integral membrane protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.2	99.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
10.4	99.0	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.7	98.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.4	82.3	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.3	81.0	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.3	81.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	2e-89	329	PtpAffx.200412.1.S1_at	pmrna830	hypothetical protein	-	0	At4g11380	beta-adaptin, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.28	2e-89	329	PtpAffx.200412.1.S1_x_at	pmrna830	hypothetical protein	-	0	At4g11380	beta-adaptin, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.57	1e-84	313	Ptp.6194.1.S1_s_at	CV237837	hypothetical protein	-	2e-11	At4g11380	beta-adaptin, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.57	1e-84	313	Ptp.6194.1.S1_at	CV237837	hypothetical protein	-	2e-11	At4g11380	beta-adaptin, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	6e-50	198	PtpAffx.203259.1.S1_s_at	pmrna6453	hypothetical protein	-	0	At4g11380	beta-adaptin, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.45	2e-34	147	PtpAffx.20086.1.A1_at	CV237398	-	-	3e-2	At4g23460	beta-adaptin, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.789.1.A1_at	CV273809	-	-	3e+0	At3g22436	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.225216.1.S1_at	pmrna44399	hypothetical protein	-	4e-12	At1g09820	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.138920.1.A1_at	BP931990	hypothetical protein	-	8e-1	At3g53235	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	40	Arabidopsis thaliana	At3g48800	824041	sterile alpha motif (SAM) domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	6e-13	75	Glycine max	Gma.3836.1.S1_at	BI317703	-	-	1e-26	At4g23460	beta-adaptin, putative	C.G.	S.X.	Please select
0.04	7e-1	34	Hordeum vulgare	HU10M01u_x_at	HU10M01u	-	-	2e+1	At5g18748	unknown protein	C.G.	S.X.	Please select
0.02	3e-6	54	Oryza sativa	Os03g0355600	AK068938.1	-	Adapter-related protein complex 1 beta 1 subunit(Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit)(Clathrin assembly protein complex 1 beta large chain).Splice isoform B	0	At4g23460	beta-adaptin, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Triticum aestivum	TaAffx.108177.1.S1_at	CA690997	-	-	9e-1	At2g40670	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	C.G.	S.X.	Please select
0.18	3e-14	77	Vitis vinifera	1619414_at	CF607341	hypothetical protein LOC100241708	-	1e-8	At4g23460	beta-adaptin, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.15205.1.A1_at	BM350765	-	-	2e+1	At5g57860	ubiquitin family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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