CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.75787.1.A1_s_at

Gene name AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 84.9 PtpAffx.75787.1.A1_s_at CV268367 AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor - 3e-1 At3g07880 Rho GDP-dissociation inhibitor family protein S.X. H.G.
0.29 50.5 PtpAffx.4462.1.S1_at CX185631 hypothetical protein - 3e-9 At3g57260 BGL2 (BETA-1,3-GLUCANASE 2) S.X. H.G.
0.27 47.1 PtpAffx.7639.1.A1_at BP935195 hypothetical protein - 3e+0 At3g25130 unknown protein S.X. H.G.
0.16 26.9 PtpAffx.203117.1.S1_at pmrna6177 hypothetical protein - 3e-90 At4g19040 EDR2 S.X. H.G.
0.11 18.1 Ptp.4661.1.S1_s_at CV256788 hypothetical protein - 1e-19 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) S.X. H.G.
0.07 11.6 Ptp.1807.1.S1_at CV229216 hypothetical protein - 9e-25 At1g01710 acyl-CoA thioesterase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.7 99.4 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.5 98.3 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.6 97.9 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.5 96.1 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1 88.6 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.93 0 757 PtpAffx.75787.1.A1_at CV268367 AP2/ERF domain-containing transcription factor - 3e-1 At3g07880 Rho GDP-dissociation inhibitor family protein C.G. S.X.
0.76 2e-86 319 Ptp.7902.1.S1_at DN501432 AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor - 4e+0 At5g57700 BNR/Asp-box repeat family protein C.G. S.X.
0.35 3e-45 182 PtpAffx.200265.1.S1_at pmrna513 AP2/ERF domain-containing transcription factor - 3e-14 At5g07310 AP2 domain-containing transcription factor, putative C.G. S.X.
0.40 2e-43 176 PtpAffx.75787.2.A1_s_at CV256635 AP2/ERF domain-containing transcription factor - 1e+0 At2g19720 rps15ab (ribosomal protein S15A B) C.G. S.X.
0.40 2e-43 176 PtpAffx.75787.2.A1_at CV256635 AP2/ERF domain-containing transcription factor - 1e+0 At2g19720 rps15ab (ribosomal protein S15A B) C.G. S.X.
0.02 1e-1 38 PtpAffx.222700.1.S1_at pmrna40273 hypothetical protein - 5e-2 At4g23780 unknown protein C.G. S.X.
0.02 1e-1 38 PtpAffx.13485.1.A1_at CV255649 hypothetical protein - 4e-11 At5g54390 AHL (ARABIDOPSIS HAL2-LIKE) C.G. S.X.
0.03 4e-1 36 PtpAffx.38925.1.S1_at DN493486 - - 5e+0 At3g60690 auxin-responsive family protein C.G. S.X.
0.03 2e+0 34 PtpAffx.62729.1.A1_at CV249947 - - 1e+0 At1g63390 flavin-containing monooxygenase-related / FMO-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At3g07880 819979 Rho GDP-dissociation inhibitor family protein F:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPO - - - C.G. S.X.
0.04 4e-1 36 Glycine max GmaAffx.83813.1.S1_at CA801253 - - 8e-1 At5g57270 unknown protein C.G. S.X.
0.04 4e-2 38 Hordeum vulgare Contig15858_at Contig15858 - - 3e-1 At3g25573 unknown protein C.G. S.X.
0.04 6e-1 36 Oryza sativa Os09g0496000 9637.m02815 - - 2e-1 At3g06000 leucine-rich repeat family protein C.G. S.X.
0.04 3e-1 36 Triticum aestivum Ta.4702.3.S1_x_at BJ267470 - - 2e+0 At5g62220 exostosin family protein C.G. S.X.
0.03 5e-3 40 Vitis vinifera 1622162_at CD718954 - - 1e+0 At3g02390 unknown protein C.G. S.X.
0.03 1e-1 36 Zea mays Zm.8490.1.A1_at CB351020 hypothetical protein LOC100277467 - 4e+0 At2g23290 AtMYB70 (myb domain protein 70) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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