Gene omics information

Query gene ID	PtpAffx.7528.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.7528.1.S1_at	CV270873	hypothetical protein	-	6e-10	At4g35980	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	Ptp.7493.1.S1_s_at	CV266457	glutathione peroxidase	-	2e-34	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.17912.1.A1_at	DN487070	hypothetical protein	-	9e-59	At1g72340	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.46832.2.S1_a_at	CF230461	hypothetical protein	-	3e-32	At4g21090	adrenodoxin-like ferredoxin 1	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	Ptp.2637.1.S1_at	CV253647	hypothetical protein	-	3e-58	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.145397.1.A1_s_at	CV251388	hypothetical protein	-	1e-35	At4g35450	AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.223332.1.S1_at	pmrna41272	hypothetical protein	-	1e-14	At5g45360	F-box family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	93.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	4e-101	369	PtpAffx.7528.2.S1_at	CV244163	-	-	8e-13	At1g22640	MYB3 (MYB DOMAIN PROTEIN 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	9e-25	115	PtpAffx.73207.1.S1_at	BU102252	hypothetical protein	-	1e-45	At1g08290	zinc finger (C2H2 type) protein (WIP3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-2	40	PtpAffx.48794.2.S1_at	AJ780674	hypothetical protein	-	2e-15	At5g27320	GID1C (GA INSENSITIVE DWARF1C)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.48794.1.S1_s_at	BU866074	hypothetical protein	-	8e-18	At5g27320	GID1C (GA INSENSITIVE DWARF1C)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.210940.1.S1_at	pmrna21497	hypothetical protein	-	5e-39	At5g27320	GID1C (GA INSENSITIVE DWARF1C)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.85122.1.S1_at	DN486812	hypothetical protein	-	2e+0	At5g28180	kelch repeat-containing F-box family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.221024.1.S1_at	pmrna37563	hypothetical protein	-	2e-6	At5g54180	PTAC15 (PLASTID TRANSCRIPTIONALLY ACTIVE15)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.209008.1.S1_at	pmrna17847	hypothetical protein	-	2e-1	At1g02700	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.201946.1.S1_at	pmrna3880	hypothetical protein	-	5e-17	At1g72220	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	6e-10	65	Arabidopsis thaliana	At4g35980	829752	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	5e-11	69	Glycine max	Gma.6825.1.S1_s_at	CD399305	-	-	3e-11	At4g35980	unknown protein	C.G.	S.X.	Please select
0.03	9e-1	34	Hordeum vulgare	HVSMEk0004F18f2_s_at	HVSMEk0004F18f2	-	-	3e-1	At4g35980	unknown protein	C.G.	S.X.	Please select
0.06	3e-4	48	Oryza sativa	Os05g0352800	AK071056.1	-	Conserved hypothetical protein	2e+0	At5g25760	PEX4 (PEROXIN4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	TaAffx.30893.1.S1_at	CA621298	-	-	3e-1	At4g35980	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1619352_at	CA818149	-	-	8e-1	At5g44572	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Zea mays	Zm.8861.1.A1_at	BM335068	-	-	5e+0	At3g28270	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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