Gene omics information

Query gene ID	PtpAffx.74807.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	83.9	PtpAffx.74807.1.S1_at	CV225788	-	-	5e-11	At5g49760	leucine-rich repeat family protein / protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.211380.1.S1_s_at	pmrna22306	hypothetical protein	-	2e-18	At1g06840	leucine-rich repeat transmembrane protein kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.80260.1.S1_at	DN494664	hypothetical protein	-	1e-12	At3g11810	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.200145.1.S1_at	pmrna269	hypothetical protein	-	9e-1	At2g40530	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.205004.1.S1_at	pmrna9902	hypothetical protein	-	4e-85	At2g31955	CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.20549.1.S1_at	CV241705	-	-	3e-3	At3g62420	ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53)	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.206499.1.S1_at	pmrna12891	dicer-like protein	-	6e-32	At5g20320	DCL4 (DICER-LIKE 4)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.3	99.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.7	97.9	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.3	97.7	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.9	96.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.2	95.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1	95.5	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.8	94.9	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.8	94.9	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.7	94.7	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	4e-151	535	PtpAffx.202872.1.S1_at	pmrna5677	hypothetical protein	-	3e-7	At5g48740	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.25	5e-55	216	PtpAffx.48411.1.A1_at	DN484400	-	-	2e+0	At5g14710	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	3e-38	161	PtpAffx.223296.1.S1_at	pmrna41221	hypothetical protein	-	7e-1	At1g31320	LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	2e-36	155	Ptp.2819.1.S1_at	DN485720	-	-	2e-8	At1g69790	protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	2e-36	155	Ptp.2819.1.S1_s_at	DN485720	hypothetical protein	-	2e-8	At1g69790	protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	5e-18	93	PtpAffx.159747.1.A1_at	CV260518	hypothetical protein	-	5e+0	At5g35737	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-11	71	PtpAffx.219819.1.S1_at	pmrna35948	hypothetical protein	-	8e-27	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	3e-10	67	PtpAffx.213753.1.S1_s_at	pmrna26859	hypothetical protein	-	5e-25	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	3e-10	67	PtpAffx.213753.1.S1_at	pmrna26859	hypothetical protein	-	5e-25	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	5e-11	69	Arabidopsis thaliana	At5g49760	835039	leucine-rich repeat family protein / protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, vacuole;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	8e-17	89	Glycine max	GmaAffx.85374.1.S1_at	BI317002	-	-	2e-7	At5g49760	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select
0.04	9e-5	48	Hordeum vulgare	Contig15714_at	Contig15714	-	-	2e-6	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	C.G.	S.X.	Please select
0.06	3e-14	81	Oryza sativa	Os11g0245200	9639.m01301	-	Protein kinase domain containing protein	2e-8	At5g49760	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-6	54	Triticum aestivum	TaAffx.15408.1.A1_at	CD453842	-	-	6e-4	At1g49730	protein kinase family protein	C.G.	S.X.	Please select
0.07	1e-12	73	Vitis vinifera	1609428_at	CF215282	hypothetical protein LOC100257037	-	1e-14	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.04	3e-7	56	Zea mays	Zm.2367.1.S1_at	AW497505	Pti1 protein	-	5e-30	At3g62220	serine/threonine protein kinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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