CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.7473.2.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 71.9 PtpAffx.7473.2.S1_at CV237958 hypothetical protein - 1e+0 At2g05803 unknown protein S.X. H.G.
0.38 63.7 PtpAffx.134623.1.A1_at CV228876 - - 2e+0 At5g39870 unknown protein S.X. H.G.
0.21 36.5 PtpAffx.215976.1.S1_at pmrna30470 hypothetical protein - 4e-25 At3g07330 ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6) S.X. H.G.
0.20 34.6 PtpAffx.140884.1.A1_s_at CV241462 hypothetical protein - 9e-4 At3g52990 pyruvate kinase, putative S.X. H.G.
0.20 34.6 PtpAffx.203574.1.S1_s_at pmrna7102 hypothetical protein - 2e-3 At1g67030 ZFP6 (ZINC FINGER PROTEIN 6) S.X. H.G.
0.14 23.5 PtpAffx.212550.1.S1_at pmrna24587 NAC domain protein, IPR003441 - 2e+0 At5g62850 AtVEX1 (VEGETATIVE CELL EXPRESSED1) S.X. H.G.
0.11 18.1 PtpAffx.217331.1.S1_at pmrna32547 hypothetical protein - 1e+0 At1g05290 transcription factor S.X. H.G.
0.09 14.6 PtpAffx.202924.1.S1_at pmrna5786 hypothetical protein - 2e+0 At3g10880 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.4 99.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.9 98.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9 95.1 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0 88.0 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8 86.4 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 3e-169 595 PtpAffx.7473.1.S1_at CV238889 - - 2e+0 At2g21290 unknown protein C.G. S.X.
0.08 1e-10 67 PtpAffx.33399.1.S1_at CA822584 hypothetical protein - 1e-1 At2g14288 - C.G. S.X.
0.02 5e-1 36 PtpAffx.73867.1.S1_at CK089227 hypothetical protein - 1e-1 At3g50690 leucine-rich repeat family protein C.G. S.X.
0.01 5e-1 36 PtpAffx.210910.1.S1_at pmrna21433 hypothetical protein - 6e-11 At1g54990 AXR4 (AUXIN RESISTANT 4) C.G. S.X.
0.03 5e-1 36 PtpAffx.210270.1.S1_at pmrna20202 hypothetical protein - 1e+0 At5g41570 WRKY24 C.G. S.X.
0.03 5e-1 36 PtpAffx.159685.1.A1_at CV266143 hypothetical protein - 1e+0 At5g43570 serine-type endopeptidase inhibitor C.G. S.X.
0.02 2e+0 34 PtpAffx.220943.1.S1_at pmrna37440 hypothetical protein - 4e-2 At4g11080 high mobility group (HMG1/2) family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.212862.1.S1_s_at pmrna25167 hypothetical protein - 4e-8 At2g26700 PID2 (PINOID2) C.G. S.X.
0.02 2e+0 34 PtpAffx.212862.1.S1_at pmrna25167 hypothetical protein - 4e-8 At2g26700 PID2 (PINOID2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e+0 34 Arabidopsis thaliana At2g05803 6240528 unknown protein F:unknown;P:unknown;C:endomembrane system - - - C.G. S.X.
0.08 3e-2 40 Glycine max Gma.899.1.A1_at BI427070 - - 1e-1 At1g72720 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig17686_at Contig17686 - - 4e-1 At4g32800 AP2 domain-containing transcription factor TINY, putative C.G. S.X.
0.05 7e-1 36 Oryza sativa Os09g0389500 CA760741 - Conserved hypothetical protein 4e+0 At3g22660 rRNA processing protein-related C.G. S.X.
0.08 2e-5 50 Triticum aestivum TaAffx.29100.1.S1_at BJ279779 - - 1e-1 At3g52520 unknown protein C.G. S.X.
0.20 3e-20 97 Vitis vinifera 1609503_at CF404599 hypothetical protein LOC100267009 - 3e-1 At5g11970 unknown protein C.G. S.X.
0.03 9e+0 30 Zea mays ZmAffx.866.1.A1_at AI770731 - - 2e-1 At5g55850 NOI C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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