Gene omics information

Query gene ID	PtpAffx.7456.1.S1_at
Gene name	2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	82.2	PtpAffx.7456.1.S1_at	CK318652	2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	2e-79	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.40192.3.S1_at	BU871164	-	-	5e+0	At2g45050	zinc finger (GATA type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	Ptp.313.2.S1_s_at	CB833390	hypothetical protein	-	8e-11	At1g72190	oxidoreductase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.221766.1.S1_at	pmrna38815	hypothetical protein	-	2e-32	At4g31120	SKB1 (SHK1 BINDING PROTEIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.214284.1.S1_at	pmrna27785	hypothetical protein	-	2e-175	At4g31590	ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.63160.1.A1_s_at	CV252057	hypothetical protein	-	5e-3	At5g60830	AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)	S.X.	H.G.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.224746.1.S1_s_at	pmrna43569	hypothetical protein	-	1e-5	At1g09850	XBCP3 (xylem bark cysteine peptidase 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.4290.1.S1_a_at	CV258163	chorismate synthase /// chorismate synthase	-	6e-76	At1g48850	EMB1144 (embryo defective 1144)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.214836.1.S1_at	pmrna28727	hypothetical protein	-	7e-1	At4g21760	BGLU47 (Beta-glucosidase 47)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.6	99.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.9	98.4	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.3	98.2	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.3	98.2	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.2	96.8	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.5	96.1	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7	94.7	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	2950	PtpAffx.7456.1.S1_s_at	CK318652	2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	2e-79	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.45	0	999	Ptp.657.1.S1_at	CK088107	2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	2e-101	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	2e-76	287	Ptp.657.2.A1_at	CV267167	-	-	2e-21	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	5e-74	280	Ptp.6891.1.S1_at	CV271183	2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	2e-65	At4g39980	DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	2e-24	115	PtpAffx.12730.1.S1_at	BP922220	2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	2e-11	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	4e-16	87	PtpAffx.47888.1.A1_at	CV257591	-	-	7e-15	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-13	79	PtpAffx.161226.1.S1_at	CN192929	2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	3e-23	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	6e-6	54	PtpAffx.35442.1.A1_at	DN491311	2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	4e-5	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	34	PtpAffx.9743.1.A1_at	DN491633	-	-	4e+0	Atcg00640	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	2e-79	297	Arabidopsis thaliana	At1g22410	838847	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	F:3-deoxy-7-phosphoheptulonate synthase activity;P:aromatic amino acid family biosynthetic process;C:membrane;OBPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.41	4e-121	436	Glycine max	Gma.5590.1.S1_at	BE822176	-	-	7e-108	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	C.G.	S.X.	Please select
0.19	7e-31	135	Hordeum vulgare	Contig3713_s_at	Contig3713	-	-	3e-10	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	C.G.	S.X.	Please select
0.30	3e-42	174	Oryza sativa	Os08g0484500	AK070359.1	-	Phospho-2-dehydro-3-deoxyheptonate aldolase 1,chloroplast precursor (EC 2.5.1.54)(Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHPsynthetase 1) (3-deoxy-D-arabino-heptulosonate7-phosphate synthase 1)	4e-37	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	1e-24	115	Triticum aestivum	Ta.1906.1.S1_at	BJ285249	-	-	3e-10	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	C.G.	S.X.	Please select
0.47	1e-99	363	Vitis vinifera	1619357_at	CB972316	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase	-	3e-71	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	C.G.	S.X.	Please select
0.17	3e-48	192	Zea mays	Zm.4468.3.S1_at	CF627497	phospho-2-dehydro-3-deoxyheptonate aldolase 1	-	4e-37	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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