CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.74542.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 PtpAffx.74542.1.S1_s_at CX658440 hypothetical protein - 5e-22 At2g43200 dehydration-responsive family protein S.X. H.G.
0.61 87.0 PtpAffx.144919.1.S1_at DN496029 hypothetical protein - 5e-1 At1g64105 ANAC027 (Arabidopsis NAC domain containing protein 27) S.X. H.G.
0.50 78.6 PtpAffx.3087.1.A1_s_at CV256705 hypothetical protein - 8e-66 At1g05570 CALS1 (CALLOSE SYNTHASE 1) S.X. H.G.
0.35 59.7 PtpAffx.20296.1.A1_at CV258041 - - 4e-31 At1g21880 LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR) S.X. H.G.
0.33 57.5 PtpAffx.213572.1.S1_at pmrna26516 hypothetical protein - 6e-66 At5g02010 ROPGEF7 S.X. H.G.
0.14 23.5 PtpAffx.10090.1.S1_at BP931257 hypothetical protein - 5e-1 At5g40590 DC1 domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.9 97.4 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.7 96.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.1 95.5 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7 94.7 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3 93.7 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-6 54 PtpAffx.201426.1.S1_at pmrna2818 hypothetical protein - 3e-53 At4g10440 dehydration-responsive family protein C.G. S.X.
0.04 2e-6 54 PtpAffx.201426.1.S1_s_at pmrna2818 hypothetical protein - 3e-53 At4g10440 dehydration-responsive family protein C.G. S.X.
0.02 6e-4 46 PtpAffx.221268.1.S1_at pmrna38028 hypothetical protein - 2e-1 At1g04530 binding C.G. S.X.
0.07 9e-3 42 PtpAffx.50892.1.A1_at CV244614 hypothetical protein - 3e-5 At5g14430 dehydration-responsive protein-related C.G. S.X.
0.07 9e-3 42 PtpAffx.210508.1.S1_s_at pmrna20612 hypothetical protein - 1e-28 At1g26850 dehydration-responsive family protein C.G. S.X.
0.02 9e-3 42 PtpAffx.209261.1.S1_at pmrna18301 hypothetical protein - 1e-48 At2g40280 dehydration-responsive family protein C.G. S.X.
0.12 9e-3 42 Ptp.532.1.S1_at CK088410 hypothetical protein - 1e-4 At1g26850 dehydration-responsive family protein C.G. S.X.
0.05 9e-3 42 Ptp.3119.1.A1_at CK091927 - - 4e-11 At4g18030 dehydration-responsive family protein C.G. S.X.
0.07 4e-2 40 PtpAffx.208807.1.S1_at pmrna17463 hypothetical protein - 9e-103 At1g26850 dehydration-responsive family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 5e-22 105 Arabidopsis thaliana At2g43200 818921 dehydration-responsive family protein F:unknown;P:unknown;C:unknown;PBOAMF - - - C.G. S.X.
0.09 6e-4 46 Glycine max Gma.6989.1.A1_at BU546484 - - 9e-1 At4g00750 dehydration-responsive family protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig13791_at Contig13791 - - 3e-11 At1g26850 dehydration-responsive family protein C.G. S.X.
0.04 4e-12 73 Oryza sativa Os10g0569300 AK072459.1 - Putative methyltransferase DUF248 family protein 3e-10 At1g26850 dehydration-responsive family protein C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.9851.1.S1_at BJ314167 Dehydration-induced protein - 8e-19 At1g33170 dehydration-responsive family protein C.G. S.X.
0.06 3e-5 48 Vitis vinifera 1612756_at CF207475 hypothetical protein LOC100258541 - 1e-45 At1g26850 dehydration-responsive family protein C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.1026.1.S1_at AI881620 Hypothetical protein LOC100193718 - 8e-1 At1g55660 F-box family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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