CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.73932.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 93.6 PtpAffx.73932.1.A1_at DN490898 hypothetical protein - 4e-1 At4g17785 MYB39 (myb domain protein 39) S.X. H.G.
0.80 96.0 PtpAffx.218821.1.S1_at pmrna34559 hypothetical protein /// hypothetical protein /// hypothetical protein /// hypothetical protein /// hypothetical protein /// hypothetical protein /// hypothetical protein /// cc-nbs-lrr resistance protein /// hypothetical protein - 2e+0 At4g05000 VPS28-2 S.X. H.G.
0.55 82.2 Ptp.5893.1.S1_s_at CX175837 hypothetical protein - 3e-23 At1g55310 SR33 S.X. H.G.
0.44 71.9 PtpAffx.214551.1.S1_at pmrna28270 hypothetical protein - 2e-10 At2g11520 CRCK3 S.X. H.G.
0.26 45.2 PtpAffx.212175.1.S1_at pmrna23874 hypothetical protein - 4e-47 At5g16750 TOZ (TORMOZEMBRYO DEFECTIVE) S.X. H.G.
0.13 21.6 PtpAffx.10935.1.S1_at CX169916 hypothetical protein - 4e-1 At4g09550 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.1 98.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.1 97.6 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.3 95.8 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7 94.7 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5 94.3 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9 92.5 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 4e-57 222 PtpAffx.11322.1.A1_s_at CV270724 hypothetical protein - 1e-1 At2g38880 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) C.G. S.X.
0.08 8e-6 52 PtpAffx.211493.1.S1_at pmrna22524 hypothetical protein - 2e+0 At2g20585 NFD6 (NUCLEAR FUSION DEFECTIVE 6) C.G. S.X.
0.03 1e-1 38 PtpAffx.89262.2.S1_a_at CV237169 hypothetical protein - 1e-13 At3g06790 plastid developmental protein DAG, putative C.G. S.X.
0.03 5e-1 36 PtpAffx.7233.1.S1_at BI126499 - - 4e-6 At2g01880 PAP7 (PURPLE ACID PHOSPHATASE 7) C.G. S.X.
0.02 5e-1 36 PtpAffx.209529.1.S1_at pmrna18881 hypothetical protein - 7e-3 At3g54290 - C.G. S.X.
0.02 2e+0 34 PtpAffx.3601.2.S1_at CX653935 hypothetical protein - 2e+0 At5g52930 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.220470.1.S1_x_at pmrna36863 hypothetical protein - 1e-4 At2g15080 AtRLP19 (Receptor Like Protein 19) C.G. S.X.
0.01 2e+0 34 PtpAffx.213468.1.S1_at pmrna26331 hypothetical protein - 8e-24 At2g28620 kinesin motor protein-related C.G. S.X.
0.02 2e+0 34 PtpAffx.210898.1.S1_at pmrna21411 - - 9e-2 At2g34080 cysteine proteinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 36 Arabidopsis thaliana At4g17785 827500 MYB39 (myb domain protein 39) Encodes a putative transcription factor (MYB39). - - - C.G. S.X.
0.11 2e-3 44 Glycine max GmaAffx.64110.1.S1_at BI785364 - - 7e-5 At4g00231 MEE50 (maternal effect embryo arrest 50) C.G. S.X.
0.02 1e+1 30 Hordeum vulgare rbags23g22_at rbags23g22 - - 5e+0 At5g16880 VHS domain-containing protein / GAT domain-containing protein C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.1975.1.S1_at - - - 0 C.G. S.X.
0.05 2e+0 34 Triticum aestivum TaAffx.85897.1.S1_at CA618633 - - 4e+0 At1g61170 unknown protein C.G. S.X.
0.03 7e+0 30 Vitis vinifera 1622280_at CA811085 - - 1e+1 At5g04047 - C.G. S.X.
0.03 2e-1 36 Zea mays Zm.8114.1.A1_at BM072985 - - 1e+0 At4g21220 bacterial transferase hexapeptide repeat-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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