CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.7369.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 88.1 PtpAffx.7369.1.A1_at BP930064 hypothetical protein - 2e-5 At5g64510 unknown protein S.X. H.G.
0.63 88.1 PtpAffx.81285.2.S1_at BP922230 hypothetical protein - 5e-10 At5g64510 unknown protein S.X. H.G.
0.56 83.9 PtpAffx.55455.1.S1_a_at CV242141 beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein - 4e-12 At1g04220 KCS2 (3-KETOACYL-COA SYNTHASE 2) S.X. H.G.
0.50 78.6 PtpAffx.23797.2.S1_at CV248730 hypothetical protein - 7e-16 At4g20870 FAH2 (FATTY ACID HYDROXYLASE 2) S.X. H.G.
0.40 67.0 PtpAffx.209398.1.S1_at pmrna18615 p-aminobenzoate synthase - 1e-25 At2g28880 emb1997 (embryo defective 1997) S.X. H.G.
0.38 63.7 PtpAffx.3989.2.S1_at BU880425 aquaporin, MIP family, TIP subfamily - 2e-19 At4g01470 TIP1 S.X. H.G.
0.36 61.6 Ptp.4040.1.S1_s_at BU861549 hypothetical protein - 2e+0 At4g21000 ACA6 (ALPHA CARBONIC ANHYDRASE 6) S.X. H.G.
0.32 55.2 Ptp.574.1.A1_at CK088966 hypothetical protein - 1e+0 At4g33670 L-galactose dehydrogenase (L-GalDH) S.X. H.G.
0.28 50.5 PtpAffx.5661.1.A1_x_at CX657739 hypothetical protein - 3e-22 At1g64650 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.3 98.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.4 97.7 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2 93.5 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8 92.1 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 6e-19 95 PtpAffx.81285.2.S1_at BP922230 hypothetical protein - 5e-10 At5g64510 unknown protein C.G. S.X.
0.01 8e-3 42 PtpAffx.205179.1.S1_at pmrna10261 peroxisomal membrane ABC transporter family, PMP family - 3e-107 At4g39850 PXA1 (PEROXISOMAL ABC TRANSPORTER 1) C.G. S.X.
0.01 5e-1 36 PtpAffx.204542.1.S1_at pmrna8914 hypothetical protein - 9e-32 At4g34940 ARO1 (ARMADILLO REPEAT ONLY 1) C.G. S.X.
0.02 2e+0 34 PtpAffx.50349.2.S1_s_at CV231388 hypothetical protein - 1e-4 At5g09960 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.225681.1.S1_at pmrna45208 cc-nbs-lrr resistance protein - 6e-6 At3g50950 disease resistance protein (CC-NBS-LRR class), putative C.G. S.X.
0.02 2e+0 34 PtpAffx.224983.1.S1_s_at pmrna43944 hypothetical protein - 5e-7 At5g38280 PR5K C.G. S.X.
0.01 2e+0 34 PtpAffx.206531.1.S1_at pmrna12958 hypothetical protein - 7e-33 At4g30700 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 2e+0 34 PtpAffx.204295.1.S1_at pmrna8448 hypothetical protein - 2e-32 At4g34940 ARO1 (ARMADILLO REPEAT ONLY 1) C.G. S.X.
0.01 2e+0 34 PtpAffx.164055.1.S1_at CV265520 hypothetical protein - 4e-52 At4g35650 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-5 50 Arabidopsis thaliana At5g64510 836572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.14 2e-6 54 Glycine max GmaAffx.33415.1.A1_at BU547602 - - 3e-1 At5g54145 unknown protein C.G. S.X.
0.03 7e-1 34 Hordeum vulgare Contig19304_at Contig19304 - - 3e+0 At3g56520 no apical meristem (NAM) family protein C.G. S.X.
0.02 3e+0 34 Oryza sativa Os03g0135600 CB642997 - Ankyrin repeat containing protein 2e+0 At1g25560 TEM1 (TEMPRANILLO 1) C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.5798.2.S1_x_at CA664775 - - 2e-8 At1g79430 APL (ALTERED PHLOEM DEVELOPMENT) C.G. S.X.
0.02 7e+0 30 Vitis vinifera 1620561_at CD713601 - - 8e-15 Atmg00030 - C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.1083.1.A1_at AI974922 - - 1e+0 At1g59830 PP2A-1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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