CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.73309.1.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 PtpAffx.73309.1.S1_a_at CV253817 hypothetical protein - 3e-11 At2g22425 peptidase S.X. H.G.
0.55 82.2 PtpAffx.211785.1.S1_at pmrna23118 hypothetical protein - 6e-63 At4g03110 RNA-binding protein, putative S.X. H.G.
0.55 82.2 PtpAffx.114526.1.A1_at CV255796 hypothetical protein - 8e-1 At5g05110 cysteine protease inhibitor, putative / cystatin, putative S.X. H.G.
0.44 71.9 PtpAffx.29473.1.S1_at BP926494 hypothetical protein - 6e-2 At1g06060 RanBPM-related S.X. H.G.
0.40 67.0 PtpAffx.207248.1.S1_at pmrna14364 hypothetical protein - 7e-44 At2g26000 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.40 67.0 PtpAffx.50045.1.A1_at CV226061 hypothetical protein - 5e-16 At1g03457 RNA-binding protein, putative S.X. H.G.
0.36 61.6 PtpAffx.125257.2.S1_a_at AI166767 hypothetical protein - 5e-6 At5g57060 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.9 98.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0 95.3 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.95 0 1124 PtpAffx.73309.1.S1_at CV253817 hypothetical protein - 3e-11 At2g22425 peptidase C.G. S.X.
0.49 4e-110 398 Ptp.2612.1.S1_a_at BU874689 hypothetical protein - 2e-15 At2g22425 peptidase C.G. S.X.
0.06 9e-3 42 PtpAffx.217411.1.S1_s_at pmrna32662 - - 7e-2 At3g06020 unknown protein C.G. S.X.
0.02 6e-1 36 PtpAffx.212929.1.S1_at pmrna25294 hypothetical protein - 6e-20 At5g50970 WD-40 repeat family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.216044.1.S1_at pmrna30601 hypothetical protein - 1e-1 At3g19000 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.202479.1.S1_at pmrna4971 hypothetical protein - 1e-72 At2g32980 unknown protein C.G. S.X.
0.03 9e+0 32 PtpAffx.67336.1.S1_at BU897301 - - 3e-1 At3g50440 MES10 (METHYL ESTERASE 10) C.G. S.X.
0.02 9e+0 32 PtpAffx.5573.1.A1_at CV243552 hypothetical protein - 2e-3 At3g05500 rubber elongation factor (REF) family protein C.G. S.X.
0.02 9e+0 32 PtpAffx.26660.1.S1_at CN523143 hypothetical protein - 8e-24 At3g14172 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 3e-11 69 Arabidopsis thaliana At2g22425 816774 peptidase F:peptidase activity;P:signal peptide processing;C:endomembrane system, signal peptidase complex, integral to membrane;MFPO - - - C.G. S.X.
0.17 1e-20 101 Glycine max GmaAffx.84838.1.S1_at BU764396 - - 2e-11 At2g22425 peptidase C.G. S.X.
0.09 3e+0 32 Hordeum vulgare Contig5094_at Contig5094 - - 5e+0 At4g40042 peptidase C.G. S.X.
0.03 2e-1 38 Oryza sativa Os03g0752800 AY332478.1 - Transcription factor, MADS-box domain containingprotein 2e-16 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.05 1e-1 38 Triticum aestivum Ta.9624.2.S1_x_at CA683316 - - 4e+0 At4g40042 peptidase C.G. S.X.
0.18 5e-7 54 Vitis vinifera 1609124_s_at CB918045 similar to Os12g0438900 - 5e-6 At2g22425 peptidase C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.723.1.A1_at AI739914 - - 8e-1 At3g07150 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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