CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.72354.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 83.9 PtpAffx.72354.1.S1_at BU889551 hypothetical protein - 3e+0 At4g14104 unknown protein S.X. H.G.
0.77 94.9 PtpAffx.15088.1.S1_at CF936886 hypothetical protein - 7e-3 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) S.X. H.G.
0.71 92.6 Ptp.7446.1.S1_at BU814736 hypothetical protein - 2e+0 At3g21710 unknown protein S.X. H.G.
0.61 87.0 Ptp.3640.1.S1_at BU895250 hypothetical protein - 7e-2 At4g09890 unknown protein S.X. H.G.
0.53 80.5 PtpAffx.149893.1.S1_s_at DN486606 hypothetical protein - 1e-8 At3g12950 catalytic S.X. H.G.
0.40 67.0 PtpAffx.157405.1.S1_at CF233029 hypothetical protein - 2e-2 At4g09467 - S.X. H.G.
0.29 50.5 Ptp.5711.1.S1_at AJ849329.1 auxin efflux carrier component - 2e-7 At1g73590 PIN1 (PIN-FORMED 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.7 98.6 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.8 98.0 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.7 97.9 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.4 97.7 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.2 97.6 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.0 97.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.9 96.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 8e-26 117 PtpAffx.162571.1.A1_at CV253632 - - 3e-12 At4g14465 DNA-binding protein-related C.G. S.X.
0.04 6e-2 38 Ptp.691.1.S1_s_at BU833779 hypothetical protein - 3e-7 At5g39740 60S ribosomal protein L5 (RPL5B) C.G. S.X.
0.01 9e-1 34 PtpAffx.213679.1.S1_s_at pmrna26707 hypothetical protein - 4e-1 At4g13820 disease resistance family protein / LRR family protein C.G. S.X.
0.04 9e-1 34 PtpAffx.206920.1.S1_at pmrna13740 hypothetical protein - 9e-60 At2g43560 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein C.G. S.X.
0.02 9e-1 34 PtpAffx.201081.1.S1_at pmrna2130 hypothetical protein - 6e-8 At4g14050 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.04 9e-1 34 PtpAffx.163141.1.S1_s_at BU872036 hypothetical protein - 7e-2 At3g16160 transcription factor C.G. S.X.
0.03 9e-1 34 Ptp.7180.2.S1_s_at CF230917 hypothetical protein - 3e-17 At3g58460 ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15) C.G. S.X.
0.04 4e+0 32 PtpAffx.7433.1.A1_at CX176213 hypothetical protein - 1e-9 At3g04460 PEX12 C.G. S.X.
0.04 4e+0 32 PtpAffx.5266.1.A1_at CV255338 - - 1e+1 At5g63780 SHA1 (shoot apical meristem arrest 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Arabidopsis thaliana At4g14104 3770179 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;VP - - - C.G. S.X.
0.05 4e+0 32 Glycine max HgAffx.21245.1.S1_at BI749576 - - 3e+0 At5g43550 - C.G. S.X.
0.04 5e+0 30 Hordeum vulgare HS17I13u_s_at HS17I13u - - 7e-1 At1g42480 unknown protein C.G. S.X.
0.02 3e-1 36 Oryza sativa Os07g0602000 AK071832.1 - NADPH HC toxin reductase 7e-1 At2g33845 DNA-binding protein-related C.G. S.X.
0.05 4e-2 38 Triticum aestivum TaAffx.84018.1.S1_at CA646263 - - 4e+0 At4g00880 auxin-responsive family protein C.G. S.X.
0.04 5e-2 36 Vitis vinifera 1610325_at CA817476 hypothetical LOC100241660 - 5e+0 At5g17795 unknown protein C.G. S.X.
0.04 1e+0 32 Zea mays Zm.9151.1.S1_at BM266916 katanin p60 ATPase-containing subunit - 3e-1 At1g80350 ERH3 (ECTOPIC ROOT HAIR 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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