Gene omics information

Query gene ID	PtpAffx.719.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	87.0	PtpAffx.719.1.A1_at	CV270015	hypothetical protein	-	2e-8	At5g42980	ATTRX3 (THIOREDOXIN 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.205485.1.S1_at	pmrna10849	hypothetical protein	-	9e-17	At1g78060	glycosyl hydrolase family 3 protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.5471.2.S1_at	CV279210	-	-	3e-23	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.82348.1.A1_at	CV250595	autoinhibited calcium ATPase	-	4e+0	At5g60440	AGL62 (Agamous-like 62)	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.249.632.A1_at	CV240290	-	-	1e+0	At3g51030	ATTRX1	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.201989.1.S1_s_at	pmrna3968	hypothetical protein	-	4e-1	At2g43640	signal recognition particle 14 kDa family protein / SRP14 family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.8	98.0	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.1	97.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.4	97.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.0	96.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0	95.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7	94.7	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	0	724	Ptp.2368.1.S1_s_at	CV239520	hypothetical protein	-	7e-13	At1g11910	aspartyl protease family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	0	724	Ptp.2368.1.S1_at	CV239520	-	-	7e-13	At1g11910	aspartyl protease family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	7e-77	287	Ptp.2592.3.S1_x_at	CV281081	thioredoxin h	-	9e-9	At1g19730	ATTRX4	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	7e-77	287	Ptp.2592.2.S1_x_at	CX185841	thioredoxin h	-	8e-6	At1g45145	ATTRX5	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	2e-46	186	PtpAffx.37138.1.S1_s_at	CV264244	thioredoxin h	-	3e-7	At1g19730	ATTRX4	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	2e-46	186	Ptp.2203.1.S1_at	CV267942	-	-	2e-9	At1g19730	ATTRX4	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	2e-28	127	PtpAffx.37138.2.S1_at	CV271795	thioredoxin h	-	2e-6	At1g19730	ATTRX4	C.G.	S.X.	Please selecteFP Browser (expression)
0.21	1e-26	121	PtpAffx.205800.1.S1_at	pmrna11463	hypothetical protein	-	1e-1	At5g42980	ATTRX3 (THIOREDOXIN 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	2e-22	107	PtpAffx.211872.1.S1_at	pmrna23309	-	-	2e-1	At3g61230	LIM domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	2e-8	59	Arabidopsis thaliana	At5g42980	834313	ATTRX3 (THIOREDOXIN 3)	encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	4e-23	109	Glycine max	Gma.866.1.S1_at	BE822435	aspartic proteinase 4	-	1e-7	At1g62290	aspartyl protease family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HV14C07u_at	HV14C07u	-	-	9e-1	At1g62850	-	C.G.	S.X.	Please select
0.08	3e-6	54	Oryza sativa	Os01g0663400	AK072645.1	-	Aspartic protease (Fragment)	7e-11	At1g11910	aspartyl protease family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	1e+0	34	Triticum aestivum	Ta.26879.1.A1_at	CD491557	-	-	1e+0	At3g22530	unknown protein	C.G.	S.X.	Please select
0.13	5e-19	93	Vitis vinifera	1620052_x_at	CF205391.1	hypothetical protein LOC100250566	-	3e-4	At1g19730	ATTRX4	C.G.	S.X.	Please select
0.06	6e-4	44	Zea mays	Zm.3830.1.S1_at	AW056258	aspartic proteinase oryzasin-1	-	2e-4	At1g11910	aspartyl protease family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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