CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.7093.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.7093.1.A1_at CK091450 - - 1e+0 At4g17600 LIL3:1 S.X. H.G.
0.11 18.1 PtpAffx.98801.1.S1_at CV249157 hypothetical protein - 6e-3 At1g63310 - S.X. H.G.
0.09 14.6 Ptp.4029.1.S1_s_at BU861407 hypothetical protein - 3e-18 At4g01900 GLB1 (GLNB1 HOMOLOG) S.X. H.G.
0.06 9.8 PtpAffx.160252.2.A1_at CV269236 - - 8e-6 At4g26640 WRKY20 S.X. H.G.
0.02 3.6 Ptp.400.1.A1_a_at CK088856 - - 1e-2 At2g37780 DC1 domain-containing protein S.X. H.G.
0.01 2.2 PtpAffx.112661.1.A1_at DN488643 hypothetical protein - 5e+0 At2g44470 BGLU29 (BETA GLUCOSIDASE 29) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.3 99.5 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.7 97.9 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.6 84.5 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-13 75 PtpAffx.216142.1.S1_s_at pmrna30747 enhancer of polycomb-like protein - 7e-29 At1g16690 transcription factor-related C.G. S.X.
0.06 1e-13 75 PtpAffx.216142.1.S1_at pmrna30747 enhancer of polycomb-like protein - 7e-29 At1g16690 transcription factor-related C.G. S.X.
0.06 9e-2 36 PtpAffx.42267.1.A1_at BP932723 - - 1e+0 At5g07560 GRP20 (GLYCINE-RICH PROTEIN 20) C.G. S.X.
0.02 9e-2 36 PtpAffx.201223.1.S1_at pmrna2430 global transcription factor group - 8e-7 At5g65630 GTE7 (Global transcription factor group E 7) C.G. S.X.
0.04 9e-2 36 PtpAffx.161372.1.S1_s_at CN517424 global transcription factor group - 6e+0 At4g21040 Dof-type zinc finger domain-containing protein C.G. S.X.
0.02 3e-1 34 PtpAffx.6163.1.S1_at AJ778035 hypothetical protein - 1e-86 At3g19820 DWF1 (DWARF 1) C.G. S.X.
0.03 3e-1 34 PtpAffx.3384.1.S1_a_at CV228515 hypothetical protein - 1e-1 At4g25940 epsin N-terminal homology (ENTH) domain-containing protein C.G. S.X.
0.06 3e-1 34 Ptp.880.2.A1_a_at CV253146 hypothetical protein - 1e-21 At4g36690 ATU2AF65A C.G. S.X.
0.05 1e+0 32 PtpAffx.4454.1.A1_at CV267250 type-a response regulator - 4e-3 At2g07440 two-component responsive regulator-related / response regulator protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 32 Arabidopsis thaliana At4g17600 827479 LIL3:1 Encodes Lil3:1 (light-harvesting-like) protein. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. A generic LHC motif is present in Lil3:1. - - - C.G. S.X.
0.06 1e+0 32 Glycine max GmaAffx.84952.1.S1_at AW596891 - - 2e-11 At1g72730 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative C.G. S.X.
0.04 5e-1 32 Hordeum vulgare Contig19625_at Contig19625 - - 1e-3 At2g02070 AtIDD5 (Arabidopsis thaliana Indeterminate(ID)-Domain 5) C.G. S.X.
0.07 2e+0 32 Oryza sativa Os07g0603000 9635.m04118 - - 9e+0 At4g28050 TET7 (TETRASPANIN7) C.G. S.X.
0.06 3e-1 34 Triticum aestivum Ta.12960.1.S1_at CA486003 - - 7e-1 At3g17640 leucine-rich repeat family protein C.G. S.X.
0.05 1e+0 30 Vitis vinifera 1621750_at CB971067 - - 2e-1 At5g59050 unknown protein C.G. S.X.
0.05 4e-1 32 Zea mays Zm.1589.1.S1_at BE056851 hypothetical protein LOC100192723 - 5e+0 At1g15220 CCMH C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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