CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.70456.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 93.6 PtpAffx.70456.1.A1_at CK090706 hypothetical protein - 2e+0 At3g58600 - S.X. H.G.
0.53 80.5 PtpAffx.213720.1.S1_at pmrna26774 hypothetical protein - 9e-9 At3g51610 unknown protein S.X. H.G.
0.42 68.6 PtpAffx.87019.1.A1_at BP935009 hypothetical protein - 9e-14 At5g19390 pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein S.X. H.G.
0.36 61.6 PtpAffx.61388.1.A1_at BP935694 hypothetical protein - 1e+0 At5g02770 unknown protein S.X. H.G.
0.23 40.5 PtpAffx.88515.1.A1_at CV263318 - - 8e-1 At5g18310 unknown protein S.X. H.G.
0.15 25.3 PtpAffx.20182.2.S1_at CV261841 - - 6e-3 At3g06660 PAPA-1-like family protein / zinc finger (HIT type) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.0 99.4 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
11.4 99.2 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.4 98.2 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.1 97.6 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.3 96.9 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1 88.6 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9 87.2 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 34 PtpAffx.222472.1.S1_at pmrna39905 transcription factor E2F - 9e-25 At5g22220 - C.G. S.X.
0.02 2e+0 34 PtpAffx.212845.1.S1_at pmrna25139 hypothetical protein - 6e-41 At5g50330 ATP binding / protein kinase C.G. S.X.
0.02 2e+0 34 PtpAffx.208476.1.S1_at pmrna16839 hypothetical protein - 8e-1 At2g20515 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.201263.1.S1_at pmrna2504 hypothetical protein - 4e-3 At5g55390 EDM2 C.G. S.X.
0.02 2e+0 34 Ptp.2507.1.A1_at CV228722 hypothetical protein - 2e-15 At5g37510 EMB1467 (embryo defective 1467) C.G. S.X.
0.02 9e+0 32 PtpAffx.7603.2.S1_at AJ769150 - - 2e+0 At1g72510 unknown protein C.G. S.X.
0.02 9e+0 32 PtpAffx.73768.1.S1_s_at CK105130 hypothetical protein - 7e-3 At3g04630 WDL1 C.G. S.X.
0.01 9e+0 32 PtpAffx.5132.1.S1_a_at CV239558 isomerase peptidyl-prolyl cis-trans isomerase - 4e-64 At5g13120 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein C.G. S.X.
0.02 9e+0 32 PtpAffx.29171.1.S1_at DN486239 hypothetical protein - 2e+0 At5g23350 GRAM domain-containing protein / ABA-responsive protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At3g58600 825029 - F:molecular_function unknown;P:endocytosis;C:membrane;MPFO - - - C.G. S.X.
0.03 2e+0 34 Glycine max Gma.5036.1.A1_at BM526476 - - 3e+0 At4g04630 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig21187_at Contig21187 - - 1e+0 At3g52420 OEP7 (OUTER ENVELOPE MEMBRANE PROTEIN 7) C.G. S.X.
0.02 3e+0 34 Oryza sativa Os03g0668900 AK108369.1 - Conserved hypothetical protein 6e-1 At3g16770 ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.78280.1.S1_at CA734927 - - 2e+0 At5g03920 unknown protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1620335_at CF404179 - - 1e+0 At2g02060 transcription factor C.G. S.X.
0.02 7e-1 34 Zea mays Zm.13228.1.S1_at CA452580 LHT1 - 5e+0 At4g17585 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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