Gene omics information

Query gene ID PtpAffx.69980.1.A1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7694.3PtpAffx.69980.1.A1_atCV236371hypothetical protein-3e-34At5g52470FIB1 (FIBRILLARIN 1)S.X.H.G.
0.6388.1PtpAffx.178.2.S1_a_atDN490262hypothetical protein-1e-22At4g02930elongation factor Tu, putative / EF-Tu, putativeS.X.H.G.
0.4975.7PtpAffx.132644.1.S1_s_atCX659479hypothetical protein-4e-8At4g21705pentatricopeptide (PPR) repeat-containing proteinS.X.H.G.
0.4471.9Ptp.6374.1.S1_a_atCV236991hypothetical protein-3e-4At1g14980CPN10 (CHAPERONIN 10)S.X.H.G.
0.4167.7PtpAffx.249.223.S1_a_atCK093588hypothetical protein-6e-25At3g03920Gar1 RNA-binding region family proteinS.X.H.G.
0.4067.0PtpAffx.675.10.S1_s_atCX175725hypothetical protein-3e-35At2g47110UBQ6S.X.H.G.
0.3762.3PtpAffx.213992.1.S1_atpmrna27260hypothetical protein-1e-23At5g15550transducin family protein / WD-40 repeat family proteinS.X.H.G.
0.3661.6PtpAffx.61867.1.S1_atCX658349hypothetical protein-3e-45At3g07770ATP bindingS.X.H.G.
0.3661.6PtpAffx.143974.1.S1_s_atBU832117hypothetical protein-3e-8At5g15550transducin family protein / WD-40 repeat family proteinS.X.H.G.
0.3357.5Ptp.4190.1.S1_x_atCV256252hypothetical protein-2e-143At3g23990HSP60 (HEAT SHOCK PROTEIN 60)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.798.6GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
6.797.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
6.497.7GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
5.396.9GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
5.196.8GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
4.996.5GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
4.996.5GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
4.796.3GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
4.696.2GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
4.195.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.152e-51202Ptp.1863.1.S1_s_atCX175638hypothetical protein-3e-89At4g25630FIB2 (FIBRILLARIN 2)C.G.S.X.
0.166e-1271PtpAffx.208316.1.S1_atpmrna16537--2e-39At5g52470FIB1 (FIBRILLARIN 1)C.G.S.X.
0.042e-240PtpAffx.99162.1.S1_atCV279989hypothetical protein-1e+0At2g17870cold-shock DNA-binding family proteinC.G.S.X.
0.032e-240PtpAffx.983.1.A1_atCX172753hypothetical protein-5e-10At5g64180unknown proteinC.G.S.X.
0.022e-240PtpAffx.9731.1.S1_atCV255821hypothetical protein-1e+1At5g44582unknown proteinC.G.S.X.
0.012e-240PtpAffx.9792.1.S1_s_atBP930774hypothetical protein-7e-24At1g49760PAB8 (POLY(A) BINDING PROTEIN 8)C.G.S.X.
0.042e-240PtpAffx.97498.1.S1_atCV246186--8e-2At4g09890unknown proteinC.G.S.X.
0.032e-240PtpAffx.95744.1.A1_atCV238553--1e-41At3g55280RPL23AB (RIBOSOMAL PROTEIN L23AB)C.G.S.X.
0.052e-240PtpAffx.95314.1.A1_atCV252554--4e-2At1g64930CYP89A7C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.213e-34145Arabidopsis thalianaAt5g52470835323FIB1 (FIBRILLARIN 1)encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.---C.G.S.X.
0.123e-23109Glycine maxGma.18058.1.S1_atCD391958--6e-72At4g25630FIB2 (FIBRILLARIN 2)C.G.S.X.
0.034e-134Hordeum vulgareContig15918_atContig15918--2e+0At5g43285-C.G.S.X.
0.055e-446Oryza sativaOs04g02300009632.m01432--3e-1At2g27390proline-rich family proteinC.G.S.X.
0.042e-136Triticum aestivumTaAffx.81516.1.S1_atCA685076--4e+0At2g40110yippee family proteinC.G.S.X.
0.041e+032Vitis vinifera1618264_x_atCF200671.1--5e-14At5g03240UBQ3 (POLYUBIQUITIN 3)C.G.S.X.
0.081e-136Zea maysZmAffx.999.1.S1_atAI881222hypothetical protein LOC100279401-5e-2At4g0081060S acidic ribosomal protein P1 (RPP1B)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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