Gene omics information

Query gene ID	PtpAffx.69785.2.A1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	83.9	PtpAffx.69785.2.A1_a_at	CV243355	hypothetical protein	-	3e-32	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.146247.1.S1_s_at	AI164459	hypothetical protein	-	8e-54	At3g15730	PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.203768.1.S1_at	pmrna7444	hypothetical protein	-	5e-29	At1g61240	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.38601.1.A1_at	CK318400	hypothetical protein	-	3e-7	At3g50500	SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.151904.1.A1_at	BP934640	hypothetical protein	-	1e+0	At1g54150	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.133005.1.S1_at	CX179252	hypothetical protein	-	2e-1	At5g25270	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.145997.1.S1_at	CN519021	hypothetical protein	-	2e-21	At2g02370	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.71189.3.S1_s_at	CV276271	hypothetical protein	-	2e-46	At2g28310	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.4	98.8	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.3	95.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8	92.1	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	2e-83	309	PtpAffx.56104.1.A1_at	CV278211	hypothetical protein	-	2e-5	At2g37060	NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8)	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	5e-41	169	PtpAffx.6778.1.A1_at	CV256220	hypothetical protein	-	3e-46	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	5e-38	159	PtpAffx.6778.2.S1_a_at	CV276301	hypothetical protein	-	3e-39	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.25	7e-37	155	PtpAffx.25202.1.A1_at	CV229061	hypothetical protein	-	8e-43	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	2e-16	87	PtpAffx.90090.1.S1_at	DN491129	hypothetical protein	-	2e-27	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	2e-12	73	PtpAffx.13671.1.S1_at	CV226095	hypothetical protein	-	4e-20	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	8e-9	61	PtpAffx.205132.1.S1_at	pmrna10159	hypothetical protein	-	3e-30	At2g13570	NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	8e-9	61	PtpAffx.205132.1.S1_x_at	pmrna10159	hypothetical protein	-	3e-30	At2g13570	NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	5e-7	56	PtpAffx.213117.1.S1_at	pmrna25668	hypothetical protein	-	1e-15	At1g21970	LEC1 (LEAFY COTYLEDON 1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	3e-32	139	Arabidopsis thaliana	At2g38880	818472	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	5e-41	169	Glycine max	Gma.1955.3.S1_at	CD402631	-	-	4e-17	At2g37060	NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8)	C.G.	S.X.	Please select
0.06	2e-1	36	Hordeum vulgare	Contig12964_at	Contig12964	-	-	2e-10	At3g53340	NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)	C.G.	S.X.	Please select
0.05	1e-2	42	Oryza sativa	OsAffx.4670.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Triticum aestivum	TaAffx.84583.2.S1_at	CA636288	-	-	1e+0	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.04	4e-4	44	Vitis vinifera	1621148_at	CB003641	-	-	9e-30	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	C.G.	S.X.	Please select
0.23	2e-10	65	Zea mays	Zm.10383.4.S1_a_at	AY106957.1	transcription factor subunit NF-YB2 /// hypothetical protein LOC100273424 /// CAAT-box DNA binding protein subunit B (NF-YB)	-	3e-12	At3g53340	NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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