CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.69725.1.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.69725.1.S1_a_at DN494612 hypothetical protein - 1e+0 At2g41130 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.73 93.6 PtpAffx.2103.1.A1_s_at CV246207 hypothetical protein - 3e-8 At4g35320 unknown protein S.X. H.G.
0.73 93.6 PtpAffx.30128.1.S1_at CV244941 hypothetical protein - 3e+0 At2g23910 cinnamoyl-CoA reductase-related S.X. H.G.
0.60 86.0 PtpAffx.265.1.A1_at CV261776 hypothetical protein - 3e-89 At2g47060 serine/threonine protein kinase, putative S.X. H.G.
0.56 83.9 PtpAffx.206254.1.S1_at pmrna12413 hypothetical protein - 1e-1 At2g07280 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.210959.1.S1_x_at pmrna21534 hypothetical protein - 8e-23 At1g54570 esterase/lipase/thioesterase family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.3 99.9 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
14.2 99.5 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.9 98.4 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.6 97.9 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.0 97.5 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.7 97.3 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6 94.5 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4 94.0 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 4e-97 355 Ptp.5286.1.S1_at CN520901 hypothetical protein - 4e-1 At5g22080 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.01 2e+0 34 PtpAffx.213624.1.S1_at pmrna26608 hypothetical protein - 8e-128 At3g08930 - C.G. S.X.
0.03 2e+0 34 PtpAffx.207400.1.S1_at pmrna14687 hypothetical protein - 9e-17 At3g51140 - C.G. S.X.
0.02 2e+0 34 PtpAffx.207110.1.S1_at pmrna14091 - - 1e-26 At5g64970 mitochondrial substrate carrier family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.206842.1.S1_at pmrna13584 hypothetical protein - 2e-28 At4g31850 PGR3 (PROTON GRADIENT REGULATION 3) C.G. S.X.
0.01 2e+0 34 PtpAffx.203568.1.S1_at pmrna7091 hypothetical protein - 2e+0 At4g16400 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.160256.2.A1_s_at BU829376 hypothetical protein - 6e-81 At5g01460 LMBR1 integral membrane family protein C.G. S.X.
0.03 2e+0 34 Ptp.1446.1.S1_at CK092198 - - 2e+0 At4g27490 3' exoribonuclease family domain 1-containing protein C.G. S.X.
0.02 8e+0 32 PtpAffx.94964.1.A1_at CV265124 hypothetical protein - 9e-30 At4g16845 VRN2 (REDUCED VERNALIZATION RESPONSE 2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At2g41130 818712 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:chloroplast envelope;PFMO - - - C.G. S.X.
0.03 5e-1 36 Glycine max HgAffx.13341.1.S1_at CB279061 - - 4e+0 At5g03944 unknown protein C.G. S.X.
0.02 1e+1 30 Hordeum vulgare Contig4570_s_at Contig4570 - - 5e+0 At5g50665 unknown protein C.G. S.X.
0.03 1e+1 32 Oryza sativa Os08g0332400 9636.m02385 - Conserved hypothetical protein 5e-2 At1g32585 VQ motif-containing protein-related C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.4798.3.S1_a_at CA601924 vacuolar proton ATPase subunit H - 4e+0 At1g27420 kelch repeat-containing F-box family protein C.G. S.X.
0.02 7e+0 30 Vitis vinifera 1618027_at CF404160 hypothetical protein LOC100241193 - 6e-2 At2g19850 - C.G. S.X.
0.03 1e+1 30 Zea mays Zm.9904.2.A1_a_at BM334819 hypothetical protein LOC100193383 - 5e+0 At2g30120 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage