CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.692.1.S1_x_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.692.1.S1_x_at CX185889 hypothetical protein - 1e-1 At5g23950 C2 domain-containing protein S.X. H.G.
0.60 86.0 PtpAffx.17886.2.S1_s_at CX183909 hypothetical protein - 9e-2 At5g16490 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) S.X. H.G.
0.60 86.0 PtpAffx.115945.1.S1_s_at CN521589 hypothetical protein - 5e-2 At4g00355 unknown protein S.X. H.G.
0.57 84.2 Ptp.5801.2.S1_a_at BU836809 hypothetical protein - 2e+0 At1g24440 protein binding / zinc ion binding S.X. H.G.
0.55 82.2 PtpAffx.113369.1.S1_at CX185014 NAC domain protein, IPR003441 - 5e-26 At1g33060 no apical meristem (NAM) family protein S.X. H.G.
0.33 57.5 PtpAffx.212106.1.S1_at pmrna23742 calcium dependent protein kinase 12 - 5e-33 At5g23580 CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.1 98.1 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.3 97.7 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.0 96.6 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1 88.6 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 0 856 PtpAffx.692.20.S1_s_at BU883660 hypothetical protein - 1e+0 At4g20250 unknown protein C.G. S.X.
0.66 7e-152 537 PtpAffx.692.16.S1_at CV272320 hypothetical protein - 2e+0 At4g20250 unknown protein C.G. S.X.
0.68 3e-148 525 Ptp.824.1.S1_x_at CF936396 hypothetical protein - 2e+0 At4g20250 unknown protein C.G. S.X.
0.37 5e-51 202 PtpAffx.44418.1.A1_at CV232741 - - 3e+0 At1g03880 CRU2 (CRUCIFERIN 2) C.G. S.X.
0.24 4e-39 163 PtpAffx.692.36.S1_at CK097610 hypothetical protein - 5e-1 At5g67490 unknown protein C.G. S.X.
0.06 2e-35 151 Ptp.1787.1.S1_s_at CV225870 tubulin alpha-5 chain - 0 At4g14960 TUA6 C.G. S.X.
0.08 3e-34 147 PtpAffx.692.3.A1_at CV275152 tubulin alpha-5 chain - 8e-157 At1g04820 TUA4 C.G. S.X.
0.10 5e-11 69 PtpAffx.149061.1.A1_at CK093011 - - 4e-15 At1g64740 TUA1 (ALPHA-1 TUBULIN) C.G. S.X.
0.07 3e-9 63 Ptp.2416.2.S1_s_at CV230713 tubulin alpha-3 chain - 9e-166 At4g14960 TUA6 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Arabidopsis thaliana At5g23950 832460 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA - - - C.G. S.X.
0.11 3e-15 83 Glycine max GmaAffx.92973.1.S1_s_at CF808698 - - 2e+0 At3g22950 ATARFC1 (ADP-ribosylation factor C1) C.G. S.X.
0.04 3e-4 46 Hordeum vulgare Contig169_at Contig169 - - 1e-19 At4g14960 TUA6 C.G. S.X.
0.03 3e-1 38 Oryza sativa OsAffx.31187.1.S1_at - - - 0 C.G. S.X.
0.04 2e-3 44 Triticum aestivum Ta.26511.1.A1_at CD491079 - - 9e-67 At5g19780 TUA5 C.G. S.X.
0.10 2e-16 85 Vitis vinifera 1610057_at CF403319 similar to poly(A)-binding protein C-terminal interacting protein 6 - 9e-2 At3g16140 PSAH-1 (photosystem I subunit H-1) C.G. S.X.
0.04 6e-2 38 Zea mays Zm.16535.2.A1_s_at CF062633 hypothetical protein LOC100276314 - 0 At1g50010 TUA2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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