Gene omics information

Query gene ID	PtpAffx.679.1.S1_s_at
Gene name	peroxiredoxin
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	94.1	PtpAffx.679.1.S1_s_at	CV276694	peroxiredoxin	-	5e-41	At3g26060	ATPRX Q	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.679.1.S1_at	CV276694	peroxiredoxin	-	5e-41	At3g26060	ATPRX Q	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.200505.1.S1_s_at	pmrna1023	hypothetical protein	-	8e-3	At3g15570	phototropic-responsive NPH3 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.18790.1.S1_at	CV278410	hypothetical protein	-	2e-19	At4g01310	ribosomal protein L5 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.5938.1.S1_at	BU837105	hypothetical protein	-	1e-20	At1g05190	emb2394 (embryo defective 2394)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.209120.1.S1_at	pmrna18047	hypothetical protein	-	2e-12	At1g13820	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.5948.1.S1_at	CV262999	hypothetical protein	-	2e+0	At5g40370	glutaredoxin, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.8	98.0	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.6	97.9	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.5	97.8	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.4	97.0	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.3	96.9	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.1	96.8	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9	96.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3	95.8	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.2	95.6	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	1808	PtpAffx.679.1.S1_at	CV276694	peroxiredoxin	-	5e-41	At3g26060	ATPRX Q	C.G.	S.X.	Please selecteFP Browser (expression)
0.61	0	841	Ptp.5942.1.S1_x_at	CV283216	peroxiredoxin	-	9e-46	At3g26060	ATPRX Q	C.G.	S.X.	Please selecteFP Browser (expression)
0.70	0	823	Ptp.7491.1.S1_at	DN493441	peroxiredoxin	-	2e-39	At3g26060	ATPRX Q	C.G.	S.X.	Please selecteFP Browser (expression)
0.62	0	678	PtpAffx.679.3.S1_at	CV244474	peroxiredoxin	-	3e-29	At3g26060	ATPRX Q	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	1e-94	347	PtpAffx.679.2.S1_at	CX171075	peroxiredoxin	-	2e-14	At3g26060	ATPRX Q	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	1e-14	81	PtpAffx.123154.1.A1_at	CK090002	-	-	5e-1	At2g17960	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.734.1.A1_s_at	CV280029	hypothetical protein	-	1e+0	At1g80700	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.225288.1.S1_s_at	pmrna44530	hypothetical protein	-	4e-1	At3g54940	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.21946.1.A1_a_at	CV274757	hypothetical protein	-	9e-1	At3g06360	AGP27	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	5e-41	169	Arabidopsis thaliana	At3g26060	822203	ATPRX Q	encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	9e-59	228	Glycine max	Gma.3317.1.S1_a_at	CD404147	-	-	2e-40	At3g26060	ATPRX Q	C.G.	S.X.	Please select
0.15	7e-11	67	Hordeum vulgare	Contig5105_at	Contig5105	-	-	8e-9	At3g26060	ATPRX Q	C.G.	S.X.	Please select
0.12	4e-6	54	Oryza sativa	Os06g0196300	AK059845.1	-	Peroxiredoxin Q	9e-12	At3g26060	ATPRX Q	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Triticum aestivum	TaAffx.80713.1.S1_at	CA693621	-	-	4e+0	At3g50250	unknown protein	C.G.	S.X.	Please select
0.37	3e-95	347	Vitis vinifera	1614204_at	CD801669	hypothetical protein LOC100250698	-	2e-58	At3g26060	ATPRX Q	C.G.	S.X.	Please select
0.06	9e-4	44	Zea mays	Zm.2236.1.S1_at	BQ538247	peroxiredoxin bcp	-	9e-9	At3g26060	ATPRX Q	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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