CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.675.5.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.70 91.7 PtpAffx.675.5.S1_at CF227425 hypothetical protein - 4e-45 At5g27490 integral membrane Yip1 family protein S.X. H.G.
0.60 86.0 Ptp.1847.1.A1_s_at CK093485 hypothetical protein - 7e-17 At2g23070 casein kinase II alpha chain, putative S.X. H.G.
0.52 79.4 Ptp.5102.1.A1_at CV267337 hypothetical protein - 1e-88 At5g45130 RHA1 (RAB HOMOLOG 1) S.X. H.G.
0.46 73.7 Ptp.5102.1.A1_x_at CV267337 hypothetical protein - 1e-88 At5g45130 RHA1 (RAB HOMOLOG 1) S.X. H.G.
0.40 67.0 Ptp.799.1.S1_s_at CV271292 hypothetical protein - 3e-82 At4g27960 UBC9 (UBIQUITIN CONJUGATING ENZYME 9) S.X. H.G.
0.38 63.7 Ptp.5095.2.S1_a_at CF235242 hypothetical protein - 2e-83 At4g32530 vacuolar ATP synthase, putative / V-ATPase, putative S.X. H.G.
0.35 59.7 Ptp.2168.1.S1_at CA927090 - - 2e-9 At5g25940 early nodulin-related S.X. H.G.
0.29 50.5 PtpAffx.17561.1.A1_s_at CF235338 hypothetical protein - 6e-50 At4g11150 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.8 98.0 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7 91.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9 87.2 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.66 0 714 Ptp.460.1.A1_at CK087646 hypothetical protein - 1e-34 At5g27490 integral membrane Yip1 family protein C.G. S.X.
0.52 8e-155 547 Ptp.5789.1.S1_at AI162378 hypothetical protein - 2e-11 At5g27490 integral membrane Yip1 family protein C.G. S.X.
0.02 8e-1 36 PtpAffx.69766.1.A1_at CV244178 - - 1e+0 At3g58600 - C.G. S.X.
0.02 8e-1 36 PtpAffx.58004.1.S1_at CX183756 - - 9e-11 At3g14100 oligouridylate-binding protein, putative C.G. S.X.
0.01 8e-1 36 PtpAffx.210588.1.S1_at pmrna20762 hypothetical protein - 2e-1 At5g64010 unknown protein C.G. S.X.
0.01 3e+0 34 PtpAffx.4007.2.S1_at CV233043 - - 5e-8 At1g78150 unknown protein C.G. S.X.
0.01 3e+0 34 PtpAffx.225905.1.S1_x_at pmrna45553 hypothetical protein - 3e-2 At2g03060 DNA binding / transcription factor C.G. S.X.
0.01 3e+0 34 PtpAffx.225905.1.S1_at pmrna45553 hypothetical protein - 3e-2 At2g03060 DNA binding / transcription factor C.G. S.X.
0.01 3e+0 34 PtpAffx.225039.1.S1_x_at pmrna44077 hypothetical protein - 4e-2 At2g03060 DNA binding / transcription factor C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 4e-45 182 Arabidopsis thaliana At5g27490 832808 integral membrane Yip1 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP - - - C.G. S.X.
0.49 4e-67 256 Glycine max Gma.739.1.S1_at BG882670 - - 6e-15 At5g27490 integral membrane Yip1 family protein C.G. S.X.
0.05 7e-2 38 Hordeum vulgare Contig9005_at Contig9005 - - 1e-14 At3g05280 integral membrane Yip1 family protein C.G. S.X.
0.09 2e-2 42 Oryza sativa Os01g0610500 AK105469.1 - Conserved hypothetical protein 1e-14 At3g05280 integral membrane Yip1 family protein C.G. S.X.
0.04 1e-1 38 Triticum aestivum Ta.7590.2.S1_a_at CK215141 - - 9e-8 At5g27490 integral membrane Yip1 family protein C.G. S.X.
0.35 1e-36 153 Vitis vinifera 1622567_at CF516028 hypothetical protein LOC100266603 - 2e-20 At5g27490 integral membrane Yip1 family protein C.G. S.X.
0.14 1e-3 44 Zea mays Zm.14670.1.S1_at BM381336 hypothetical protein LOC100193527 - 8e-5 At3g05280 integral membrane Yip1 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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