CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.66655.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 71.9 PtpAffx.66655.1.S1_at CK107251 - - 3e-2 At5g45940 atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11) S.X. H.G.
0.25 43.6 PtpAffx.215767.1.S1_at pmrna30147 hypothetical protein - 5e+0 At3g45525 - S.X. H.G.
0.17 29.1 PtpAffx.49569.1.A1_at CV279998 hypothetical protein - 2e-5 At1g26090 unknown protein S.X. H.G.
0.12 19.6 Ptp.2047.2.A1_at DN484352 hypothetical protein - 8e+0 At3g60020 ASK5 (ARABIDOPSIS SKP1-LIKE 5) S.X. H.G.
0.09 14.6 Ptp.1210.1.A1_at CK090183 hypothetical protein - 3e-1 At1g36272 unknown protein S.X. H.G.
0.05 8.3 PtpAffx.224879.1.S1_x_at pmrna43783 hypothetical protein - 5e-65 At4g01810 protein transport protein-related S.X. H.G.
0.05 8.3 Ptp.1937.1.A1_s_at CK093324 - - 4e+0 At4g17980 anac071 (Arabidopsis NAC domain containing protein 71) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.1 97.6 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5 94.3 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3 93.7 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0 92.9 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9 92.5 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 4e-2 38 PtpAffx.209819.1.S1_at pmrna19360 hypothetical protein - 4e-1 At4g26810 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.02 2e+0 32 PtpAffx.210002.1.S1_at pmrna19729 hypothetical protein - 2e-35 At4g27340 Met-10+ like family protein C.G. S.X.
0.03 1e+1 30 PtpAffx.46770.1.S1_at CV260858 hypothetical protein - 3e-1 At3g55290 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.03 1e+1 30 PtpAffx.3783.1.S1_at BP930269 hypothetical protein - 7e-15 At4g33030 SQD1 C.G. S.X.
0.01 1e+1 30 PtpAffx.217024.1.S1_at pmrna32129 hypothetical protein - 7e-15 At1g72560 PSD (PAUSED) C.G. S.X.
0.00 1e+1 30 PtpAffx.207921.1.S1_at pmrna15722 hypothetical protein - 4e-72 At1g48090 phosphoinositide binding C.G. S.X.
0.01 1e+1 30 PtpAffx.203554.1.S1_at pmrna7058 RNA polymerase IV subunit - 4e-13 At2g40030 NRPD1B C.G. S.X.
0.06 1e+1 30 PtpAffx.201248.1.S1_at pmrna2475 hypothetical protein - 5e-23 At1g30450 CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1) C.G. S.X.
0.08 1e+1 30 Ptp.3929.1.S1_at BU864386 - - 6e+0 At5g17810 WOX12 (WUSCHEL related homeobox 12) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-2 38 Arabidopsis thaliana At5g45940 834634 atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11) Encodes a CoA pyrophosphatase, also has minor activity of NADH pyrophosphatase. Most strongly expressed in embryo cotyledon and hypocotyl, flower, and phloem of vascular tissue. Over-expression mutant had a bigger plant with wider rosette. - - - C.G. S.X.
0.06 1e+1 30 Glycine max Gma.6314.1.S1_at BQ612856 - - 8e+0 At3g58150 - C.G. S.X.
0.03 1e+1 28 Hordeum vulgare Contig9713_s_at Contig9713 - - 1e+0 At2g28760 NAD-dependent epimerase/dehydratase family protein C.G. S.X.
0.03 1e+1 30 Oryza sativa Os.55812.1.S1_at - - - 0 C.G. S.X.
0.04 7e+0 30 Triticum aestivum Ta.6924.2.A1_at BQ168924 - - 1e+1 At5g41520 40S ribosomal protein S10 (RPS10B) C.G. S.X.
0.04 3e+1 26 Vitis vinifera 1622603_at CB344263 hypothetical protein LOC100247693 - 3e-19 At3g25400 - C.G. S.X.
0.04 1e+1 28 Zea mays ZmAffx.596.1.A1_at AI715024 - - 8e-1 At1g21940 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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