CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.6526.1.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 88.1 PtpAffx.6526.1.S1_a_at CV268340 hypothetical protein - 2e-34 At5g08580 calcium-binding EF hand family protein S.X. H.G.
0.80 96.0 PtpAffx.213720.1.S1_at pmrna26774 hypothetical protein - 9e-9 At3g51610 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.53314.1.A1_at CV229793 hypothetical protein - 7e-2 At1g14450 unknown protein S.X. H.G.
0.25 43.6 PtpAffx.70456.1.A1_at CK090706 hypothetical protein - 2e+0 At3g58600 - S.X. H.G.
0.17 29.1 PtpAffx.40711.1.A1_a_at DN496741 hypothetical protein - 3e-4 At1g53040 unknown protein S.X. H.G.
0.11 18.1 PtpAffx.93007.2.S1_at DN492053 hypothetical protein - 7e-9 At5g03345 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.3 99.9 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.6 97.9 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
6.2 97.6 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
5.3 96.9 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0 88.0 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.91 0 989 PtpAffx.6526.1.S1_at CV268340 hypothetical protein - 2e-34 At5g08580 calcium-binding EF hand family protein C.G. S.X.
0.52 0 680 PtpAffx.205231.1.S1_s_at pmrna10371 hypothetical protein - 2e-34 At5g08580 calcium-binding EF hand family protein C.G. S.X.
0.52 0 680 PtpAffx.205231.1.S1_at pmrna10371 hypothetical protein - 2e-34 At5g08580 calcium-binding EF hand family protein C.G. S.X.
0.48 1e-138 494 PtpAffx.207178.1.S1_at pmrna14241 hypothetical protein - 6e-50 At5g08580 calcium-binding EF hand family protein C.G. S.X.
0.08 4e-24 113 PtpAffx.62338.1.S1_s_at CX169010 hypothetical protein - 3e-1 At1g30475 - C.G. S.X.
0.01 2e-1 38 PtpAffx.225184.1.S1_at pmrna44338 tir-nbs-lrr resistance protein - 5e-7 At1g72860 disease resistance protein (TIR-NBS-LRR class), putative C.G. S.X.
0.01 8e-1 36 PtpAffx.203291.1.S1_at pmrna6522 hypothetical protein - 1e-13 At4g11110 SPA2 (SPA1-RELATED 2) C.G. S.X.
0.03 8e-1 36 PtpAffx.116672.1.A1_at CK093463 - - 3e+0 At4g14305 - C.G. S.X.
0.02 3e+0 34 PtpAffx.825.1.A1_at CV270791 - - 4e+0 At5g01750 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 2e-34 147 Arabidopsis thaliana At5g08580 830759 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:plasma membrane;MPOFB - - - C.G. S.X.
0.02 3e+0 34 Glycine max GmaAffx.85577.2.S1_at CA784145 - - 2e-4 At1g06930 unknown protein C.G. S.X.
0.08 5e-9 61 Hordeum vulgare Contig22595_at Contig22595 - - 1e-3 At5g08580 calcium-binding EF hand family protein C.G. S.X.
0.09 1e-9 65 Oryza sativa Os.9096.2.S1_a_at - - - 0 C.G. S.X.
0.04 3e-9 63 Triticum aestivum Ta.26311.1.A1_at CD490642 - - 1e-3 At5g08580 calcium-binding EF hand family protein C.G. S.X.
0.08 1e-8 59 Vitis vinifera 1613846_at CF209858 hypothetical protein LOC100262960 - 2e-2 At5g08580 calcium-binding EF hand family protein C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.848.1.A1_at AI770631 - - 8e-1 At1g22720 wall-associated kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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