CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.65236.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.65236.1.A1_at CK087944 hypothetical protein - 2e-1 At5g19630 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.108294.1.A1_at CV245961 ethylene-insensitive 3f - 8e+0 At5g36722 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.134238.1.A1_at CV242930 hypothetical protein - 3e-3 At2g47350 PAPA-1-like family protein / zinc finger (HIT type) family protein S.X. H.G.
0.44 71.9 Ptp.7538.1.S1_at DN492313 hypothetical protein - 8e-13 At2g44090 - S.X. H.G.
0.43 69.7 PtpAffx.18689.1.A1_a_at CV237087 hypothetical protein - 2e-28 At3g11200 AL2 (ALFIN-LIKE 2) S.X. H.G.
0.13 21.6 Ptp.3625.1.A1_at CV267089 hypothetical protein - 2e-12 At3g07560 PEX13 (PEROXIN 13) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.9 97.4 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9 87.2 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8 86.4 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 7e-101 367 PtpAffx.147323.1.A1_at CV257845 hypothetical protein - 2e+0 At3g22530 unknown protein C.G. S.X.
0.40 4e-56 218 Ptp.5598.1.S1_s_at DN484758 hypothetical protein - 2e+0 At5g23535 KOW domain-containing protein C.G. S.X.
0.04 3e-1 36 Ptp.1352.1.S1_at BU871647 hypothetical protein - 9e-1 At5g39260 ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21) C.G. S.X.
0.01 1e+0 34 PtpAffx.225687.1.S1_at pmrna45221 hypothetical protein - 0 At5g66760 SDH1-1 C.G. S.X.
0.01 1e+0 34 PtpAffx.213384.1.S1_at pmrna26189 hypothetical protein - 6e-24 At3g11760 unknown protein C.G. S.X.
0.03 1e+0 34 Ptp.4496.1.S1_at CB239354 hypothetical protein - 2e-36 At3g10950 60S ribosomal protein L37a (RPL37aB) C.G. S.X.
0.03 1e+0 34 Ptp.4496.1.S1_x_at CB239354 hypothetical protein - 2e-36 At3g10950 60S ribosomal protein L37a (RPL37aB) C.G. S.X.
0.02 5e+0 32 PtpAffx.4892.1.S1_a_at CV270247 hypothetical protein - 1e-2 At4g21500 unknown protein C.G. S.X.
0.02 5e+0 32 PtpAffx.42822.1.A1_at CX177625 AP2/ERF domain-containing transcription factor - 7e-13 At5g51190 AP2 domain-containing transcription factor, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 36 Arabidopsis thaliana At5g19630 832083 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BOPAF - - - C.G. S.X.
0.03 5e+0 32 Glycine max HgAffx.11487.1.S1_at CB934963 - - 5e+0 At3g49580 LSU1 (RESPONSE TO LOW SULFUR 1) C.G. S.X.
0.03 7e-3 40 Hordeum vulgare AF254799_CDS-2_at AF254799_CDS-2 - - 3e-2 At1g73190 TIP3 C.G. S.X.
0.03 3e-2 40 Oryza sativa Os11g0198900 AK107759.1 - Hypothetical protein 6e+0 At5g38800 AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43) C.G. S.X.
0.04 2e-1 36 Triticum aestivum TaAffx.113464.1.S1_s_at CA611857 - - 2e-1 At2g33400 unknown protein C.G. S.X.
0.04 3e-4 44 Vitis vinifera 1616419_at CD798271 hypothetical protein LOC100244325 - 1e-1 At1g11440 - C.G. S.X.
0.03 2e+1 28 Zea mays ZmAffx.988.1.S1_at AI834703 - - 3e+0 At5g50562 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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