Gene omics information

Query gene ID	PtpAffx.65220.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	93.8	PtpAffx.65220.1.A1_at	CK090302	hypothetical protein	-	9e-2	At5g35120	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.41731.1.S1_at	DN490331	-	-	1e-1	At5g03100	F-box family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.208266.1.S1_s_at	pmrna16449	hypothetical protein	-	9e-25	At3g27400	pectate lyase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.214426.1.S1_x_at	pmrna28057	hypothetical protein	-	1e-1	At5g57780	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.143354.1.S1_s_at	BU893073	hypothetical protein	-	5e+0	At5g56900	CwfJ-like family protein / zinc finger (CCCH-type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.274.2.S1_at	CK105866	hypothetical protein	-	2e-15	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.7578.1.A1_s_at	CV237629	hypothetical protein	-	3e-11	At2g38110	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.943.1.A1_at	CK089617	hypothetical protein	-	1e+0	At1g26590	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.1601.6.A1_a_at	CV277396	-	-	6e-53	At2g39730	RCA (RUBISCO ACTIVASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.982.1.A1_s_at	BP936490	hypothetical protein	-	5e-38	At5g16980	NADP-dependent oxidoreductase, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.1	99.6	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
13.4	99.4	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.9	98.9	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.2	97.6	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.0	97.5	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.9	97.4	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	4e-97	355	PtpAffx.36157.1.A1_at	CV256121	hypothetical protein	-	3e-1	At3g55670	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	4e-69	262	PtpAffx.216778.1.S1_at	pmrna31771	hypothetical protein	-	5e-23	At2g42300	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	8e-9	61	PtpAffx.213317.1.S1_at	pmrna26044	hypothetical protein	-	5e-23	At2g42300	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	8e-9	61	PtpAffx.213317.1.S1_x_at	pmrna26044	hypothetical protein	-	5e-23	At2g42300	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.202518.1.S1_at	pmrna5041	hypothetical protein	-	2e-1	At2g31430	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.206797.1.S1_s_at	pmrna13493	hypothetical protein	-	3e-81	At2g25430	epsin N-terminal homology (ENTH) domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.88137.1.A1_at	CV280580	-	-	5e+0	At4g38220	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.7909.2.A1_at	CV255887	-	-	6e-31	At1g51710	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.7909.2.A1_a_at	CV255887	hypothetical protein	-	6e-31	At1g51710	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-2	38	Arabidopsis thaliana	At5g35120	833465	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	8e-6	52	Glycine max	Gma.16147.1.S1_at	BE473577	-	-	2e+0	At2g31005	-	C.G.	S.X.	Please select
0.04	7e-1	34	Hordeum vulgare	EBpi01_SQ004_D06_s_at	EBpi01_SQ004_D06	-	-	6e+0	At1g54870	binding / catalytic/ oxidoreductase	C.G.	S.X.	Please select
0.04	1e+1	32	Oryza sativa	Os07g0517900	AK102289.1	-	Cytochrome P450 family protein	3e+0	At2g47490	mitochondrial substrate carrier family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Triticum aestivum	TaAffx.118483.1.A1_at	BQ160961	-	-	2e+0	At3g04950	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1620022_at	CF413848	-	-	1e+1	At4g01995	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.3918.1.S1_at	AW062130	membrane protein	-	4e+0	At1g50720	stigma-specific Stig1 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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