Gene omics information

Query gene ID	PtpAffx.6482.1.S1_at
Gene name	predicted membrane protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.90	97.9	PtpAffx.6482.1.S1_at	CV260043	predicted membrane protein	-	4e-82	At5g36290	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.31246.1.S1_at	CF120135	hypothetical protein	-	1e+0	At3g61640	AGP20	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.249.318.A1_s_at	CV130443	hypothetical protein	-	9e-15	At2g35690	ACX5 (ACYL-COA OXIDASE 5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.104546.1.S1_at	CV250441	potassium efflux antiporter	-	9e-43	At5g51710	KEA5	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.20885.1.S1_a_at	BI125338	hypothetical protein	-	9e-3	At3g47300	SELT (SELT-LIKE PROTEIN PRECURSOR)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.76483.1.A1_s_at	CK113344	hypothetical protein	-	8e-24	At4g04910	NSF (N-ethylmaleimide sensitive factor)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.654.1.S1_at	CX174493	hypothetical protein	-	5e-7	At4g37830	cytochrome c oxidase-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.16094.1.S1_at	CX657826	hypothetical protein	-	6e-13	At1g15350	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.88257.1.S1_at	CV274540	hypothetical protein	-	6e-3	At3g56640	exocyst complex subunit Sec15-like family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.208454.1.S1_at	pmrna16794	hypothetical protein	-	3e-1	At3g05920	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.6	98.6	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.2	97.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.0	97.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4	90.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	1e-147	523	Ptp.1621.2.A1_at	CV261960	predicted membrane protein	-	1e-29	At5g36290	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.47	1e-113	410	Ptp.1621.3.S1_s_at	CK102338	predicted membrane protein	-	9e-23	At5g36290	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.25	6e-82	305	PtpAffx.130635.1.S1_s_at	CX185950	predicted membrane protein	-	8e-19	At5g36290	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.5590.3.S1_at	BU876814	hypothetical protein	-	6e-15	At1g30825	DIS2 (DISTORTED TRICHOMES 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.56157.1.A1_at	CV275852	hypothetical protein	-	2e-3	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.215938.1.S1_at	pmrna30416	hypothetical protein	-	4e-2	At5g59616	protein kinase-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.213873.1.S1_at	pmrna27059	hypothetical protein	-	7e-30	At3g27700	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.213460.1.S1_at	pmrna26316	hypothetical protein	-	1e-6	At2g37370	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.225698.1.S1_x_at	pmrna45251	hypothetical protein	-	1e+0	At3g47600	ATMYB94 (MYB DOMAIN PROTEIN 94)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	4e-82	305	Arabidopsis thaliana	At5g36290	833627	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BMOPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.42	1e-95	351	Glycine max	Gma.10004.1.S1_at	BF070937	-	-	6e-25	At5g36290	unknown protein	C.G.	S.X.	Please select
0.31	1e-12	73	Hordeum vulgare	Contig14363_at	Contig14363	-	-	4e-8	At5g36290	unknown protein	C.G.	S.X.	Please select
0.38	1e-25	119	Oryza sativa	Os08g0528500	AK111028.1	-	Protein of unknown function UPF0016 family protein	3e-2	At5g36290	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	2e-4	48	Triticum aestivum	Ta.9324.2.S1_a_at	CA659465	-	-	4e-4	At5g36290	unknown protein	C.G.	S.X.	Please select
0.52	2e-149	527	Vitis vinifera	1611691_s_at	CB980403	hypothetical protein LOC100265089	-	6e-59	At5g36290	unknown protein	C.G.	S.X.	Please select
0.24	6e-27	121	Zea mays	Zm.5147.1.A1_at	CK787170	-	-	2e-25	At5g36290	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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