Gene omics information

Query gene ID	PtpAffx.64132.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.64132.1.S1_at	BP930135	-	-	4e-10	At5g61520	hexose transporter, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.4727.1.A1_at	CV226733	hypothetical protein	-	2e+0	At5g40500	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.213725.1.S1_at	pmrna26782	cytochrome P450 probable campestanol to 6-deoxocathasterone or 6-oxocampestanol to cathasterone	-	8e+0	At4g24972	TPD1 (TAPETUM DETERMINANT 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.216566.1.S1_x_at	pmrna31418	hypothetical protein	-	3e-1	At1g20875	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.216566.1.S1_at	pmrna31418	hypothetical protein	-	3e-1	At1g20875	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.74112.1.A1_at	BP930450	hypothetical protein	-	8e-5	At1g32350	AOX1D (alternative oxidase 1D)	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.216713.1.S1_at	pmrna31668	hypothetical protein	-	7e-7	At3g45290	MLO3 (MILDEW RESISTANCE LOCUS O 3)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.4	99.8	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
15.9	99.6	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
15.8	99.6	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
11.1	99.1	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.9	98.4	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.3	95.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.5	83.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	5e-38	159	PtpAffx.213643.1.S1_at	pmrna26649	hypothetical protein	-	1e-8	At5g61520	hexose transporter, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	4e-17	89	PtpAffx.204076.1.S1_at	pmrna8050	hypothetical protein	-	5e-5	At3g19940	sugar transporter, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-7	57	Ptp.5717.1.S1_at	AJ698936.1	hypothetical protein	-	3e-3	At1g07340	ATSTP2 (SUGAR TRANSPORTER 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e-7	56	PtpAffx.224567.1.S1_s_at	pmrna43218	hypothetical protein	-	5e-42	At1g50310	STP9 (SUGAR TRANSPORTER 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e-7	56	PtpAffx.224567.1.S1_at	pmrna43218	hypothetical protein	-	5e-42	At1g50310	STP9 (SUGAR TRANSPORTER 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-5	50	PtpAffx.224569.1.S1_at	pmrna43220	hypothetical protein	-	6e-20	At1g50310	STP9 (SUGAR TRANSPORTER 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	1e-4	48	PtpAffx.75454.1.A1_at	CV269454	-	-	6e-27	At3g19930	STP4 (SUGAR TRANSPORTER 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-3	44	PtpAffx.225072.1.S1_at	pmrna44158	hypothetical protein	-	3e-3	At1g77210	sugar transporter, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-3	44	PtpAffx.208245.1.S1_at	pmrna16413	hypothetical protein	-	8e-28	At1g67590	remorin family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	4e-10	65	Arabidopsis thaliana	At5g61520	836273	hexose transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-2	40	Glycine max	Gma.13872.1.S1_at	BU544185	-	-	3e-21	At4g02050	sugar transporter, putative	C.G.	S.X.	Please select
0.06	2e-4	46	Hordeum vulgare	Contig22330_at	Contig22330	-	-	2e-2	At1g11260	STP1 (SUGAR TRANSPORTER 1)	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	Os08g0492200	9636.m03870	-	-	4e-2	At2g41260	M17	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	TaAffx.84350.1.S1_at	CA638834	-	-	8e-1	At2g27360	lipase, putative	C.G.	S.X.	Please select
0.07	1e-4	46	Vitis vinifera	1614764_at	BQ794515	hexose transporter HT2	-	9e-5	At1g34580	monosaccharide transporter, putative	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	Zm.9234.1.A1_at	BM335631	-	-	4e-1	At3g24740	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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